Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0285 ATGGCGGATTTCGCTTCTTCCCCCGCAACCCTACCCCTCAATCCCCAACCCTCCGAATCCGCACCAGATCCACTCCCCCAATCCGCAACACCACCCTCATCCACGCCCATCGCCACAAACCCTAATCCCAATCCAACGCTTCTTCCTCCGCCGCCCGCTCTCCTCTTTCCGGCGGGCACTCCGCCGCAGGTCCCCGGCGTACTCCCTCCCTCATTCCGCCCGCTCGCTCCGCAATTCTCCCCCGTCCCCTCGCCCAACCCGGCCTTCCAAAGCCCTGCCGTTCCTCCGCCCGGCGTGACCGGCGCCGCCGTGGCAGTTCCGCCGCCGCAGATGCAGCAGATGCTTTCGTACCAGATTCAACCCGGTAATCCGGCCCTGCGGCCCTTCGCTCCGATCCCCAACGGTTACGCTGCAGCTCCGACCATAACTCCCGCGGGAATTCCTCGTTACCCCCCTCCTTATGGAACTATGGTTCGTCCTGTATTTCCTGCACGCCCTCCTGGAGCAGTTAACATACCTACAATATCACGCCCGCCTGTTGCAGGGATCCCTGCAGTTCGCCCAATTATTCCGCCTGTAGTCAGACCTGTGGTAGCCCCTAGTGTTACTCCAGCTGAGAAGCCTCAAAACACAGTTTACATTGGCAAGATTGCACCAACTGTGGAAAATGAGTTCATGCTCTCTCTCCTTCAATTATGTGGAACTATCAAGACCTGGAAACGTCCTCAGGATTTATCAACTGGAACTCCTACAAGTTTTGGGTTTTATGAGTTTGAGTCTGCAGAAGGGGTTCTTCGTGCCTTGCGTCTCCTTACTAAACTGAATATTGATGGGCAAGAATTGAAGGTCAATGTGAATCAAGCTATGAAAGAAAATCTGGAGCGGTATGATAAGACAAAAACTGAGAACTTGAAGAACAAAAAAACTCAGGCAGGAGTAGGTGAAAAAAACGAAGGTGAACAACCTTCTAATGCAAACAAGGATGCAAAGGCTGACACAGAACCCTCAAATAAAGAGGTTCTTGAATCATCAAACAAGGAATCACATGATGTGGCAAACTTTGGGATTGTCACTGATGAAGATAGAGAAGCTGATCGTGAGGCTTTAGAAAAGATTTCAAAGATGATAGAGGAAAGGTTGAAGATTAGACCTTTGCCTGCACCATCTGCTCAGCTGACTGGTGATGGTTCTGTAAATTTAACTTCAGAACAACCTGTTAAAGCAAGGGATGGAGACTCTGTTGTGGATACCGAGAAGAATGAATCTGCTGAAAATAAAAATGAGAAAGAGACAAACAATGATAACAAACCAACCAGTGAACATGAAAGGACTGAAAGTCCTGATAGAAGGCATGATAGAAAAAGCAGAGAGAGGGACCGAGATAGGGAGCTAAAACGAGAAAAAGATAGAGAACTTGAAAGATATGAAAGAGAAGCAGAGCGGGAACGTGTTCGGAAAGAGAGGGAACAAAGACGAAGGGTTGAGGAGACTGAGCGTCAGTATGAAACATATTTGAAGGATTGGGAGTATAGAGAACGAGAGAAAGAGAAAGAGCGTCAGTATGAAAAAGAGAAGGAGAAGGAAAGGGAACGTAAAAGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAGGATTCTAGGAAGAGGTGGCGCAGAAGTGTGATAGAGGATAAGAGAAAGAAGAGGCTGCGTGAGAAGGAAGATGACCTGGTCGACCGACAAAAAGAAGAGGAAGAAATTGCTGAGACCAAAAAGAAGGCCGAGGAGGAACAGAAGCAACAAAGAGATGCATTAAAGCTATTATCTGAGCATGTGGTAAATGCTGGTAAGGAAAATATGATTACTGAAGAGATTACTATTGAAGTTAAAAGCATCGTTGCTGAACAAGATACTGTAGCTGATTATCATCATGAATATCATATTGGTGACGGTGATTCAATAAATGTCATCAATGATGAATCAATAATAGCATCTGTTGCTACAACTGATGCACAGTCAGGTGGCAATGCTCCTACAAAGAAATTGGGGTTTGGTCTAGTTGGTTCAGGGAAAAGAACATCTGTCCGTTCTGTTTTCCATGAAGAGGATGATAATGAGGCCAAAAAAATGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCAGTTCAACCTACGGTTTCTGGGCCAACGCCACCAAATTTGGCTGCTGCTGCAGAATTTGCAAAGCGTATATCCAGTACAAATTTCAAGGAAGAGAAGCTGGATGGTGAACGGGATAGAAGTAGGCGTTCAAATGAGAAGTCTAACCACCGGGACAGGAGTGATGATGGCACTCACAACAGAGATGAAAACAAGGAGAGAATTCCTGGCCGTGACAGGGATCGAGATCATGGATCGGAGAAACTCAGGACTTCTGATAACAAGAGGCTTTTGGATGCAAAACAATTGATTGATATGATACCAAAGACGAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTATATGATAAGCATCAATTACATGATAGAATGAGACCGTGGATTTCAAAGAAAATCCAAGAGTTTTTGGGGGAAGAAGAAACTACATTGATAGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCATCACAAATGCTTGAGCGACTTCAGATCATTTTGGATGAAGAGGCTGAAATGTTCGTTCTGAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGTCAGGGCTAGCTTTGAGGTCAAAATCATGA 2766 0.4566 MADFASSPATLPLNPQPSESAPDPLPQSATPPSSTPIATNPNPNPTLLPPPPALLFPAGTPPQVPGVLPPSFRPLAPQFSPVPSPNPAFQSPAVPPPGVTGAAVAVPPPQMQQMLSYQIQPGNPALRPFAPIPNGYAAAPTITPAGIPRYPPPYGTMVRPVFPARPPGAVNIPTISRPPVAGIPAVRPIIPPVVRPVVAPSVTPAEKPQNTVYIGKIAPTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQAMKENLERYDKTKTENLKNKKTQAGVGEKNEGEQPSNANKDAKADTEPSNKEVLESSNKESHDVANFGIVTDEDREADREALEKISKMIEERLKIRPLPAPSAQLTGDGSVNLTSEQPVKARDGDSVVDTEKNESAENKNEKETNNDNKPTSEHERTESPDRRHDRKSRERDRDRELKREKDRELERYEREAERERVRKEREQRRRVEETERQYETYLKDWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVIEDKRKKRLREKEDDLVDRQKEEEEIAETKKKAEEEQKQQRDALKLLSEHVVNAGKENMITEEITIEVKSIVAEQDTVADYHHEYHIGDGDSINVINDESIIASVATTDAQSGGNAPTKKLGFGLVGSGKRTSVRSVFHEEDDNEAKKMRPLVPIDYSTEELQAVQPTVSGPTPPNLAAAAEFAKRISSTNFKEEKLDGERDRSRRSNEKSNHRDRSDDGTHNRDENKERIPGRDRDRDHGSEKLRTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHDRMRPWISKKIQEFLGEEETTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVESGLALRSKS* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0285 921 MobiDBLite consensus disorder prediction 1 72 - -
Gso2g0285 921 Coils Coil 458 507 - -
Gso2g0285 921 SMART pwi_2 837 910 IPR002483 GO:0006397
Gso2g0285 921 SMART rrm1_1 211 284 IPR000504 GO:0003723
Gso2g0285 921 MobiDBLite consensus disorder prediction 387 497 - -
Gso2g0285 921 MobiDBLite consensus disorder prediction 295 359 - -
Gso2g0285 921 MobiDBLite consensus disorder prediction 295 314 - -
Gso2g0285 921 MobiDBLite consensus disorder prediction 321 346 - -
Gso2g0285 921 SUPERFAMILY PWI domain 842 909 IPR036483 GO:0006397
Gso2g0285 921 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 31 921 - -
Gso2g0285 921 CDD RRM_RBM25 211 291 IPR034268 -
Gso2g0285 921 Gene3D - 202 317 IPR012677 -
Gso2g0285 921 MobiDBLite consensus disorder prediction 568 593 - -
Gso2g0285 921 SUPERFAMILY RNA-binding domain, RBD 195 287 IPR035979 GO:0003676
Gso2g0285 921 Coils Coil 562 606 - -
Gso2g0285 921 MobiDBLite consensus disorder prediction 392 406 - -
Gso2g0285 921 Pfam PWI domain 844 907 IPR002483 GO:0006397
Gso2g0285 921 MobiDBLite consensus disorder prediction 512 551 - -
Gso2g0285 921 ProSiteProfiles PWI domain profile. 824 921 IPR002483 GO:0006397
Gso2g0285 921 Gene3D PWI domain 800 916 - -
Gso2g0285 921 MobiDBLite consensus disorder prediction 746 805 - -
Gso2g0285 921 MobiDBLite consensus disorder prediction 15 72 - -
Gso2g0285 921 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 31 921 - -
Gso2g0285 921 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Gso2g0285 921 Coils Coil 510 538 - -
Gso2g0285 921 MobiDBLite consensus disorder prediction 409 497 - -
Gso2g0285 921 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 282 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0285 Gso-Chr2 3094016 3100123 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0285 K12822 - gmx:100803051 1465.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0285 2 3094016 3100123 Gso2g0285 2 3094016 3100123 ECH
Gso1g0279 1 3282645 3289007 Gso2g0285 2 3094016 3100123 GST