Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0279 ATGGCGGATTCCGCCTCTTCCCCCGCAACCCTTCCTCCCAATCCCCAACCCTCCCAATCCGCACCCGATCTACTCTCCCAATCCGCAACACCACCCTCATCCACTCCCCTCGCCACAAACCCTAATCCCAACCCAACGCTGCTTCCTCCGCCGCCCACTCTCCACTTTCTGGCGGGCACTCCGCCGCAGGTCCCCGGCGTCCTCCCTCCCTCTTTCCGGCCGCTCGGGCCTCAGGTGCCGCAATTCTCCCCCGTCCCGGCGCCCAACCCGGCCTACCAAAACCCTGCTGTCCCGCCGCCCGGCGTTCCCGGCGCCACCGTGGCAGTTCCGCCGCCGCAGATGCAGGCTATGATGTCGTACCAGGTTCAGCCCGGTAACCCGGCCATGCGGCCCTTCGCTCCGATCCCTAACGGCTACGCCGCAGCTCCGAACGTAACTCCCGCGGGAATTCCTCGTTACCCCCCTCCTTATGGAACTATGGTTCGTCCTGTATTTCCTGCACGCCCTCCTGGAGCAGTTAACATACCTACTATATCACGCCCACCAGTTGCAGGGATCCCTGCAGTTCGCCCAATTATTCCTCCTGTTGTCAGACCTGTGGTTGCCCCTAGTGTTACTCCAGCTGAGAAGCCTCAAAACACAGTTTACATTGGCAAGATTGCACCAACTGTGGAAAATGAGTTCATGCTCTCTCTCCTTCAATTATGTGGAACTATCAAGACCTGGAAACGTCCTCAGGATTTATCAACTGGAACTCCTACAAGTTTTGGGTTTTATGAGTTTGAGTCTGCAGAAGGGGTTCTCCGGGCCTTGCGTCTCCTTACTAAACTGAATATTGATGGGCAAGAACTGAAGGTCAACGTGAATCAAGCTATGAAAGAAATTCTGGAGCTGTATGTTAAGACAAAAACTGAGAACTTGAAGAACAAAGAAACTCAGGAAGTAGGTGAAAAAAATGAAGGTGAACAACCTTCTAATGCAAACGAGGATGCAAAGGTTGACACAGAACCCTCAAATAAAGAGGCTAGTGAATCATCAAACAAGGAATCCCATGATGTGGCAAACTTTGGGATTGTCACGGATGAAGATAGAGAAGCTGATTGTGAGGCTTTAGAAAAGATTACAAAGATGATAGAGGAAAGGTTGAAGACTAGACCTTTGCCTACACCACCTGCACAGCCAACTGGTGATGGTTCTGTAAATTTAACTTCTGAACAACCTGTTAAAGCCCGAGATGGAGACTCTGTTGTGGATACAGAGAAGAATGAATCTGCTGAAAATAAAAATGAGAAAGAGACGAACAATGATAACAAACCAACCAGTGAACATGAAAGGACTGAAAGCCCTGATAGAAGGCATGATAGAAAAAGCAGAGAGAGGGACCGAGATAGGGAGCTAAAACGAGAAAAAGATAGAGAACTTGAAAGATATGAAAGAGAAGCAGAGCGGGAACGTGTTCGGAAAGAGAGGGAACAAAGACGAAGGGTTGAGGAGGCTGAGCGTCAGTATGAAACATATTTGAAGGATTGGGAGTATAGGGAACGAGAGAAAGAGAAAGAGCGTCAGTATGAAAAAGAGAAGGAGAAGGAAAGGGAGCGTAAAAGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAGGATTCTAGGAAGAGATGGCGCAGAAGTGTGATAGAGGAGAAGAGAAAGAAGAGGCTGCGTGAGAAGGAAGATGACCTGGTTGACCGACAAAAAGAAGAGGAAGAAATTGCTGAGGCCAAAAAGAAGGCTGAGGAGGAACAAAAGCGACAAAGAGATGCATTAAAGCTTTTATCTGAGCATGTGGTAAATGGTGGTAAGGAAAATATGATTACTGAAGAGATTACTAATGAAGTTAAAAGCATTGTTGTTGAACAAGATACTGTAGCTGACTATAGTCGTGAAGATCATATTGGTGACGGTAATTCAATAAATGTCATCATTGATGAATCAACCATAGCATCTGTTGCTCCAACTGATGCACAGTCAGGTGGCAATGCTCCTACAAAGAAATTGGGGTTTGGTCTAGTTGGTTCAGGGAAAAGAACATCTGTCCCTTCTGTTTTCCATGAAGAGGATGATGATGATGCACACAAGGACAAAAAAATGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTTTCTGGGCCAACACCACCAAATTTGGCTGCTGCTGCAGAATTTGCAAAGCGTATATCCAGTACAAATTTCAAGGAAGAGAAGCTGGATGGAGAACGGGATAGAAGTAGGCGTTCAAATGAGAAGTCTAACCACCGGGACAGGAGTGATGAAGATGGCACGCACAACAGAGATGAAAACAAGGAGAGAATTCCTGGCCGTGACAGGGATCGAGATCATGGATCGGAGAAACTCAAAACTTCTGATAATAAGAGGCTTTTGGATGCAAAACAATTGATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTGTATGATAAGCATCAATTACATGATAGAATGAGACCGTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGGGAAGAAGAAACTACATTGATAGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCATCACAAATGCTTGAGCGACTTCAGATAATTTTGGATGAAGAGGCTGAAATGTTCGTTCTGAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGTCGGGGCTAGCTTTGAGGTCAAAATCATGA 2784 0.4612 MADSASSPATLPPNPQPSQSAPDLLSQSATPPSSTPLATNPNPNPTLLPPPPTLHFLAGTPPQVPGVLPPSFRPLGPQVPQFSPVPAPNPAYQNPAVPPPGVPGATVAVPPPQMQAMMSYQVQPGNPAMRPFAPIPNGYAAAPNVTPAGIPRYPPPYGTMVRPVFPARPPGAVNIPTISRPPVAGIPAVRPIIPPVVRPVVAPSVTPAEKPQNTVYIGKIAPTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQAMKEILELYVKTKTENLKNKETQEVGEKNEGEQPSNANEDAKVDTEPSNKEASESSNKESHDVANFGIVTDEDREADCEALEKITKMIEERLKTRPLPTPPAQPTGDGSVNLTSEQPVKARDGDSVVDTEKNESAENKNEKETNNDNKPTSEHERTESPDRRHDRKSRERDRDRELKREKDRELERYEREAERERVRKEREQRRRVEEAERQYETYLKDWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVIEEKRKKRLREKEDDLVDRQKEEEEIAEAKKKAEEEQKRQRDALKLLSEHVVNGGKENMITEEITNEVKSIVVEQDTVADYSREDHIGDGNSINVIIDESTIASVAPTDAQSGGNAPTKKLGFGLVGSGKRTSVPSVFHEEDDDDAHKDKKMRPLVPIDYSTEELQAVQPTVSGPTPPNLAAAAEFAKRISSTNFKEEKLDGERDRSRRSNEKSNHRDRSDEDGTHNRDENKERIPGRDRDRDHGSEKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHDRMRPWISKKIKEFLGEEETTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVESGLALRSKS* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0279 927 MobiDBLite consensus disorder prediction 379 499 - -
Gso1g0279 927 SUPERFAMILY RNA-binding domain, RBD 198 288 IPR035979 GO:0003676
Gso1g0279 927 Gene3D PWI domain 806 922 - -
Gso1g0279 927 Coils Coil 564 608 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 309 361 - -
Gso1g0279 927 ProSiteProfiles PWI domain profile. 830 927 IPR002483 GO:0006397
Gso1g0279 927 MobiDBLite consensus disorder prediction 688 709 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 394 408 - -
Gso1g0279 927 SUPERFAMILY PWI domain 848 915 IPR036483 GO:0006397
Gso1g0279 927 MobiDBLite consensus disorder prediction 20 35 - -
Gso1g0279 927 Coils Coil 460 509 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 567 599 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 693 709 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 514 534 - -
Gso1g0279 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Gso1g0279 927 Coils Coil 512 540 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 309 348 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 411 499 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 1 69 - -
Gso1g0279 927 MobiDBLite consensus disorder prediction 36 69 - -
Gso1g0279 927 Pfam PWI domain 850 913 IPR002483 GO:0006397
Gso1g0279 927 CDD RRM_RBM25 214 296 IPR034268 -
Gso1g0279 927 MobiDBLite consensus disorder prediction 751 811 - -
Gso1g0279 927 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 927 - -
Gso1g0279 927 SMART pwi_2 843 916 IPR002483 GO:0006397
Gso1g0279 927 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 927 - -
Gso1g0279 927 SMART rrm1_1 214 287 IPR000504 GO:0003723
Gso1g0279 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 285 IPR000504 GO:0003723
Gso1g0279 927 Gene3D - 206 295 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0279 Gso-Chr1 3282645 3289007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0279 K12822 - gmx:100809428 1499.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0279 1 3282645 3289007 Gso2g0285 2 3094016 3100123 GST