Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0226 ATGGCTCTATCACGTTTGTCCCACCGCAGCATCGGATCCACTCTCACAAAACCCTTCTCCGCCGCCGCCGCCTCCGCCGCCTCCTCCCGTTCGATCTCCACCTCGGACACCCCCTTAACAATCGAGACCTCTGTCCCCTTCACCGCGCACAACTGCGACCCCCCGTCACGCGCGGTCGCGACCTCCTCCTCGGAGCTCCTCACCTTCTTCCGCGACATGGCCCTGATGCGGCGCATGGAGATCGCCGCTGACTCCCTCTACAAGGCCAAGCTCATCCGCGGCTTCTGCCACCTCTACGACGGCCAGGAGGCCGTCGCCGTCGGCATGGAGGCCGCCATCACTAAAAAGGACTCCATCATCACCGCCTACCGCGACCATTGCATCTTCGTCGGCCGCGGTGGCACGCTCCTGGAGGTCTTCGCCGAGCTCATGGGCCGCAAGGAAGGATGCTCGAAGGGGAAGGGCGGGTCCATGCATTTTTATAAGAAGGAGAGTGGGTTTTATGGTGGGCATGGGATTGTTGGGGCGCAGGTTCCGTTGGGGTGTGGGTTGGCGTTTGCTCAGAAGTATTCTAAGGACGAGAGTGTCACTTTTGCTATGTATGGAGATGGCGCTGCCAATCAGGGACAGCTCTTTGAGGCGCTTAATATCGCCGCGCTTTGGGATCTTCCTGCTATTTTGGTCTGCGAGAATAATCACTATGGGATGGGGACTGCGGAGTGGAGAGCTGCCAAGAGTCCTGCTTATTATAAGCGTGGGGATTACGTGCCTGGCTTGAAGGTTGATGGTATGGATGTTCTTGCTGTTAAACAAGCTTGCAAATTTGCAAAGGAACATGCTTTGAAGAATGGACCCCTTATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTGCTGCTGAAAAGGAGCTAAAGGACATTGAGAAAGAAGTCAGAAAAGAAGTTGACGAAGCCATTGCTAAAGCAAAGGAGAGTCCAATGCCAGATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAA 1191 0.5298 MALSRLSHRSIGSTLTKPFSAAAASAASSRSISTSDTPLTIETSVPFTAHNCDPPSRAVATSSSELLTFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKKDSIITAYRDHCIFVGRGGTLLEVFAELMGRKEGCSKGKGGSMHFYKKESGFYGGHGIVGAQVPLGCGLAFAQKYSKDESVTFAMYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLVLSHDIAAEKELKDIEKEVRKEVDEAIAKAKESPMPDPSDLFTNVYVKGYGVETFGADRKEVRATLP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0226 396 Gene3D - 24 391 - -
Gso2g0226 396 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 61 377 IPR029061 -
Gso2g0226 396 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 8 396 - -
Gso2g0226 396 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 64 376 IPR017597 GO:0004739|GO:0006086|GO:0043231
Gso2g0226 396 CDD TPP_E1_PDC_ADC_BCADC 69 359 - -
Gso2g0226 396 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 8 396 - -
Gso2g0226 396 MobiDBLite consensus disorder prediction 299 319 - -
Gso2g0226 396 Pfam Dehydrogenase E1 component 72 367 IPR001017 GO:0016624
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0226 Gso-Chr2 2394578 2399939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0226 1 396 Acyl Lipid Metabolism Gene Families AT1G24180 80.556 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0226 K00161 - gmx:100816737 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0226 2 2394578 2399939 Gso2g0226 2 2394578 2399939 ECH
Gso2g0226 2 2394578 2399939 Gso18g1061 18 18175157 18195294 PCT
Gso18g1061 18 18175157 18195294 Gso2g0226 2 2394578 2399939 PCT