Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1061 ATGGCTCTATCGCGCGTGGCTCAATCGTCGCCATCACAGTCGAATCTTTTGAAACCCCTCTCGTCGTACTTATCCCTACGACGCCGTTCGGTGTCGACCTCGTCGGAGCCCCTCACCGTGGAGACCTCGGTGCCCTTCACCTCCCACAACTGCGACGCGCCTCCACGCGCCGTGGAGACGTCCTCGGCGGAGCTCTTCTCGTTCTTCCGTGACATGGCGCTGATGCGGCGGATGGAGATCGCGGCGGACTCGCTCTACAAGGCCAAGCTCATACGCGGCTTCTGCCACCTCTACGATGGCCAGGAGGCCGTCGCCGTCGGCATGGAGGCCGCCATCACGCGCAAGGATTGTATCATCACCGCCTACCGCGACCACTGCACCTTCCTCGCCCGCGGTGGAACCCTAATCGAGGTCTTCGCTGAGCTCATGGGCCGCCGCGACGGCTGCTCCAAGGGGAAAGGAGGATCCATGCACTTTTACCGCAAAGAAGGTGGCTTCTACGGTGGCCATGGAATTGTTGGGGCGCAGGTTCCGCTGGGGTGTGGCTTGGCTTTTGCTCAGAAGTATTGTAAGGATGAGAATGTTACGTTTTCTATGTACGGCGATGGTGCTGCCAATCAGGGGCAGTTGTTCGAGGCGCTTAACATTTCTGCGCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTAGTTATTACAAGCGTGGGGATTATGTTCCTGGATTGAAGGTAGATGGCATGGATGCTCTTGCTGTGAAACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTAAAGAATGGTCCCATTATTCTCGAGATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATTGCTACTGAAAAGGAGCTAAAGGACATTGAAAAGGAAATAAGAAAAGAAGTAGATGAAGCCATTGCCAAAGCTAAGGAAAGTCAAATGCCAGAGCCATCTGATTTATTTACCAATGTATATGTAAAAGGCTTCGGTGTCGAGGCTTGTGGCGCGGATAGGAAAGAACTTAGGGCTACTTTGCCCTGA 1188 0.5278 MALSRVAQSSPSQSNLLKPLSSYLSLRRRSVSTSSEPLTVETSVPFTSHNCDAPPRAVETSSAELFSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRKDCIITAYRDHCTFLARGGTLIEVFAELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLGCGLAFAQKYCKDENVTFSMYGDGAANQGQLFEALNISALWDLPSILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEFALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLTHEIATEKELKDIEKEIRKEVDEAIAKAKESQMPEPSDLFTNVYVKGFGVEACGADRKELRATLP* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1061 395 Coils Coil 333 357 - -
Gso18g1061 395 CDD TPP_E1_PDC_ADC_BCADC 68 358 - -
Gso18g1061 395 MobiDBLite consensus disorder prediction 298 317 - -
Gso18g1061 395 Gene3D - 20 389 - -
Gso18g1061 395 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 59 376 IPR029061 -
Gso18g1061 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 13 395 - -
Gso18g1061 395 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 64 375 IPR017597 GO:0004739|GO:0006086|GO:0043231
Gso18g1061 395 Pfam Dehydrogenase E1 component 71 366 IPR001017 GO:0016624
Gso18g1061 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 13 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1061 Gso-Chr18 18175157 18195294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1061 1 395 Acyl Lipid Metabolism Gene Families AT1G24180 79.545 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1061 K00161 - gmx:100813933 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0226 2 2394578 2399939 Gso18g1061 18 18175157 18195294 PCT
Gso18g1061 18 18175157 18195294 Gso2g0226 2 2394578 2399939 PCT