Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1425 ATGGGTGGTTCCGTTTTCACTCACTTCCTCGTTCTCCCTTCCTCTTCTTCTCTCTCTTTTCCCACTCTCTTCCCATCCAAATTCCCCACCAAACCCATCAATGAATCCGTTCCCTTCACGCTTATCTGCAACCAATTCCCTTTCAAACTCACTACTTCGCGGCCTTCCCAATTCTCAGCTCCTCCTCGTTACTCATGCTCTGTAAAAAAGATAAAAGCTTCCGGAAGTCAGCAAACAGGATCCATACGACATGGAGACAACCTTGATGCAACGAAGAGCAGGAGTTTGCTGGAGAAGTTTCAGAGGAAAATGCCAATGGAATTCCTTAGCACCCTTTTCAACAAACAATCTATGTTGAGTGACTTTACAACCAAAGATATTGTAGATGGGGAAAGATCATCCAAATGGGTTTCAGCATTCCTCTTTGGACAAACTATATCAGTGATTTCTCCTGATGTTTCATATGCAAGCAGCTCAGCAAGAATAAATGAGATATATGAGGTTGGAGAGTTGTTTGATTTAAGCATCCAACTAATATACTTGGTATTGCTATTAGGTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGTGCAGTGATGCTGCGCAGGAAATTTTACCCTGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCGGATCTTGCCCAGGTTTACAACGCTCTTGGTGTGAGCTATGTCCGCGATGGGAAAGTTGACAAAGGAATTGCTCAGTTTGAGACAGCTGTCAAGCTTCAACCAGGCTATGTCACAGCTTGGAACAATCTCGGTGATGCCTTTGAGAGTAAAAAGGACTACAAGTCTGCTCTAAAGGCATTTGAAGAAGTCCTACTATTTGATCCTAACAACAAGGTTGCCCGGCCTAGGAGAGATTCTTTGAAGGGACTTGTTGATGCAACCAAAGGAGTTACTGTCATCAAGTCAACAGAGAAGAAGTGA 1074 0.4376 MGGSVFTHFLVLPSSSSLSFPTLFPSKFPTKPINESVPFTLICNQFPFKLTTSRPSQFSAPPRYSCSVKKIKASGSQQTGSIRHGDNLDATKSRSLLEKFQRKMPMEFLSTLFNKQSMLSDFTTKDIVDGERSSKWVSAFLFGQTISVISPDVSYASSSARINEIYEVGELFDLSIQLIYLVLLLGLLGTGTFFVIRQVLVRRELDLSAKELQEQVRSGDAGATELFELGAVMLRRKFYPAATKFLLQAIEKWDGDNPDLAQVYNALGVSYVRDGKVDKGIAQFETAVKLQPGYVTAWNNLGDAFESKKDYKSALKAFEEVLLFDPNNKVARPRRDSLKGLVDATKGVTVIKSTEKK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1425 357 SUPERFAMILY TPR-like 223 332 IPR011990 GO:0005515
Gso20g1425 357 ProSiteProfiles TPR repeat profile. 261 294 IPR019734 GO:0005515
Gso20g1425 357 Gene3D Tetratricopeptide repeat domain 217 339 IPR011990 GO:0005515
Gso20g1425 357 ProSiteProfiles TPR repeat profile. 295 328 IPR019734 GO:0005515
Gso20g1425 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 61 347 - -
Gso20g1425 357 PANTHER TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN PYG7, CHLOROPLASTIC 61 347 - -
Gso20g1425 357 SMART tpr_5 295 328 IPR019734 GO:0005515
Gso20g1425 357 SMART tpr_5 261 294 IPR019734 GO:0005515
Gso20g1425 357 ProSiteProfiles TPR repeat region circular profile. 295 328 - -
Gso20g1425 357 Pfam Tetratricopeptide repeat 266 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1425 Gso-Chr20 44439846 44443949 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1425 - - gmx:100800455 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1425 20 44439846 44443949 Gso10g1931 10 46273826 46278052 GST