Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1398 ATGTGTAGTATGTGCCATTATTGTGGTGTGGGCTTGACAGAATCAAATTTTGACAACAAGAAACAGGGAAATGAGAGTAGTCTAAAGTTGAATGGTAAAGTTTCCATTAGGCCTTGCAAATCTTGTGGAGAGAAGCTAGAGCGAGCAAATGCGAAATGGCATAGTACAAGTCCATATGCAACACCACTTATCAGTCCAACTATGTCATTGCTAAGTACTGATAGCTGTGTCTCCACTTGCAGTGAGTTTTCAGTTGATGTGAACTCATCTGACAGGAATAGTCAAGAAGAAAGTTCAGTTGAAGGCATTGTGGAAGAGCTTGATTATAAGTTGAATGGTTCACAAAAAGTGATGGAAAACAATAACAACAATGAGGGTTACACAGTGAGAGATGTGGAGATTGCACAAAACTTTCAAGAAGTAAAAGCTGATTTTTCTGAAGAACCTATTGCATCCTCTGCTGTCGAAGAAGCTGAATATTCTCTTCCTGATGATTTGGATGTCCAAACTTGGGAACCTCCCGAGCCAGAAAACCCACAGGATGATATGGAAAATAGTGTGACTTGTAATGACGATGATGAAGACCAGGGCCTAGGGATTGCAAACTGGGGTGAGCCTACCTCTATGAGTAGTTCTGAGGATGAATTAAGTGGGAGCTATAGGTTCAAAGAGGAAAAACAAAAAGCAATGGAAGAAGTAATGAATGGGAAATTCAAGGCACTTGTTGGTCAGCTTCTTAAATCTGTGGGAGTTTCCTCTTCTGATGAAGGTGATAAGAGTTGGGTGGACATAGTTACATCTTTATCATGGGAAGCTGCTTCTTTTTTGAAGCCTGGTGCAATTGGAGGTAATGCAATGAATCCTGATGGATATGTTAAAGTGAAGTGCATTGCTGCTGGTTCCTGCAGCCAAAGTCAACTAATCAGAGGTTTGGTCTTCAAAAAACATGCTGCTCACAAGCATATGCCCACTAAGTATAAAAATCCAAGATTATTACTGATTAGCGGTGTGCTTGGCCATTCTATCAATGGGCTGTCTTCCTTTGACTCCATGGACCAGGAGAAAGATGATCTGAAATCTAAAATGGATCGTATAGAAATGTGCCATCCAAATGTTATATTAGTGGAGAAAACTGTTTCTCGTGATATACAAGAGTCAATTTTGGCAAAGGGAATGACACTTGTGCTTGATATGAAGCTTCATCGTCTAGAAAGAGTTGCACGTTGTACTAGTTCACCAATTTTATCATGCGATAATTTGAACGGTCAAAAGCTAAGACACTGTGACTTTATCTATTTTGAGAAGTTTGTGGAGGAACATGATGCTGTTGGTGAAGGAGGAAAGAAGCCCATCAAGACTTTGATGTTCATTGAGGGCTGTCCTACACGTTTGGGCTGCACGATTTTACTGAAAGGTACACACAGTGATGAACTGAAGAGGATCAAATGTGTCATACGGTATGCAGTTGTCATGGCATATCACTTGATCCTTGAAACCTCTTTTCTTGTTGATCAGAAAGCAATGTTCTCTACCATTCCTGCTGTGAGTGTAGCAGATATCTTGCCAACTGATAAAAAATCCCGTGATTCAGCATCCATTAATTCAAGCATTCCATCTCTTGAGTATTCTACTGAGAATGGAATAGTTAGTACTGATATTCCCATATGCAATGGACTTCATGAAAAAAACACCAATGGTTTAAACCTTGGATCGGAGGAGTTTTCCCAATTCTCTTGTGAACCATATAATCCAGCCGTCTTTTCTGGGTTCTCAGCTATTTCATCTTCTCTTAAGAAGGTTATGGGGGACAGTTTTCCCTTTGCATCTTCCGCTCCTTATCAATCTTTATCAGCATACTTTGGCTTCAATGGAAGGAAACCTGATGGTATGGTTAATGAGTCAATTTCTGTTTTAAACTCTCTAGAGGCTGATGAAAATACCACGATGGAAGCGAAAAGTCATTCTAATGAAGTGAAGTTACTTAATGGTGGACAATCCCTGTCTTCACCTGTGCACTTAGATTCCAATGGGAATATAAGTAAAGATGATGGAAATAATAGAAAAGAACTCCAAAGTAAAGATGATATCAATGCCGTGTTGGATTCTCAGAGTATTTTGGTCTTGATGTCTAGCCGGAATGCCTTAAGAGGGACTGTATGCCAGCAAAGTCATTTTTCACATATTATGTTCTACAAGAATTTTGATATTCCACTTGGAAAGTTTCTGGAGGAAAACTTACTCAATCAGACAAGACTTTGTGATGCTTGTCAAGAACTGCCAGATGCTCACTTTTATTATTATGCTCATCACTATAAACAGCTTACTATACAAGTTAAACGCTTGCCCCAGGAAAAAAGTTTGCTTGGAGAGGCAGAAGGGAAAATTTGGATGTGGAGCCGTTGTCGAAAATGCAAGTCTGGTTCTACAAAGAGAGTATTGATATCCACCACTGCCCGTAGTTTATCATTTGGAAAATTTTTGGAGCTTAGCCTTTCTCACTATTCTTCTAGCAGAAAATTGAGTTGTGGACATTCTCTTGATAGGGATTTTCTCTACTTCTTTGGATTAGGTCACATGGTTGCAATGTTCAGATATTCATCTGTTGCCACATATACTGTGTCTATGCCTCCTCAAAAGCTAGAATTCAGTGGTGCAATAAGACAAGAGTGGCTTTCAAAAGAGACCCAGAATGTGTATATGAAAGGCATAACATTATTCACCGAAGTTGCAAACTGTTTGAAGACAATACAATTTGATGGCCTTGGAGGATCAATTAGAGATTTCTCTGAGGTTGAGAAAATGTTAAAGCAAGAGCAAGAAGAATTTGAGGCAAACATCAAGACTGTTGTTGCTAAAAAGGGGGATCCAGATCAGGCTGCCTTCAAACTTCTCAGTTTAAACCGATTGATGTGGGATCTTTTGATTAAATCCTATGTGTGGGTTCGGCGCTTGTACCCATTACACTCATCTGATGTCTCTGAGAAAGTTATGCAAGAACACGATTATTCAAAGGTGGAAGGTACTGCTAGTAGAGAAACTGGGTCTATGGGTAATTTTATTGAAGATGGGAATGCCAATGTAAAAATTATGTTTGATACATCTAAGCAAGTAAATGAACTACCAATAAAGGAAATTCCTATCAGTGGGCCTCTTCTAGAGTGCAATGAACAGGCTCATCCATCTAACACACAGAATGAAAGGATACCAATTGTTGATGATTTGAGATCAAGGAGATTGTCTGACCAAAAGTTGAATTTGAGTCTGGATGTTATACCAACTCATCTTGAAGTAGGTGCAAATTCTTCAGGTTCTACAGATATTCAAACTAATCATTTGGTTTCTGATTTCAAGATATTAAACAAAAGTGCTTCCTTGCATTCACCAATTTCTAACATGCTGGATTCAAATGATTGGTTCTGGAAGCCATTTGCTGACATTCGGCAGATAGGCATAAGGGAACTCCAGAAAAGATTATTGCCAAAATTTGAATCTGTAAGCTGCTCTATTGCTGAATATATGCCCACAGCAAATCAATTAATCACCGAGGAAGGTACAAGGTTGCATATCCCTCTCAAGACTGACAATCATGTTGTGTCTGACTTCGAGGGTGAACCCTCAAGCATAATTGCTTGTGCACTTGCGTTATTGAAAGATGCATATGAGGTGTCAGAAGTTGATGATGAGGATGACAGAAACGAAAGTGGAATAACTTCAAACTCAACAGAAAGTTTGCATGGCTTGACCCATGGCGCTACCTTAACTTCTTCACACTCATTTTCAAGAAGTTCTTCAGATTCAGATTCTGTGCATTCAGCAGGAAGCACTTCTTCAGAGGAGTCACGAGCCTCTCGTGCTACAGAAAACCATAGCATAGAGATTGCTATGGGTTATGCAAAATCACTTGGGAGGGAAAAATATTCAGTGATATGTCATTATTTTAAGCAGTTCCGTGAACTTAGAAATTGGTGTTGCCCATCTGAGCTTGATTTTATTGCTTCTTTAAGCCGCTGTAGGAATTGGGATGCCAAAGGTGGAAAAAGCAAGTCCTATTTTGCAAAAACACTTGATGACAGATTCATCATAAAAGAGATTAAGAAGACAGAACTTGATTCATTTTTGGGGTTTTCTTCTCTGTATTTCAAACACATGAGAGAATCATTTGAATTTGGCAGCCAAACTTGTCTTGCAAAAGTCTTGGGGATATATCAGGTTACTAAAAGACACGTCAAAAGTGGAAAAGAGGTTAAATATGACCCCCTCATGGTGATGGAAAATCTTACCTACAATAGAAATATTACACGCCAGTATGATCTTAAAGGTGCTCTTTATGCCCGGTACAATTCTGCTGCCGATGGTGCTGGAGATGTTCTTTTGGATCAGAACTTTGTGAATGACATGAATTCTTCCCCATTATATGTCAGCCATAAAGCAAAGCGTGTTCTTCAACGTGCTGTTTGGAATGACACATCTTTTCTGAATTCAATCAATGTGATGGATTACTCCTTGCTTGTTGGAGTAGATTCTCAGAAGCACGAGCTTGTCTGCGGGATCATTGATTATCTCAGGCAGTATACTTGGGACAAACATCTTGAGACATGGATGAAGTCTTCACTTGTTGTGCCAAAAAATGTGTTGCCAACTGTAATCTCTCCTAAAGAATACAAAAAGAGGTTCAGAAAGTTTATGTCTACATATTTTTTGAGTGTTCCAGATCACTGGTGTTCCCAGAAATCCTCCAATCCTTGCAAACTTTGTTGCTCAGGGGAAGAAGACCCTTCCCAGCAAAAGCCCTAG 4794 0.394 MCSMCHYCGVGLTESNFDNKKQGNESSLKLNGKVSIRPCKSCGEKLERANAKWHSTSPYATPLISPTMSLLSTDSCVSTCSEFSVDVNSSDRNSQEESSVEGIVEELDYKLNGSQKVMENNNNNEGYTVRDVEIAQNFQEVKADFSEEPIASSAVEEAEYSLPDDLDVQTWEPPEPENPQDDMENSVTCNDDDEDQGLGIANWGEPTSMSSSEDELSGSYRFKEEKQKAMEEVMNGKFKALVGQLLKSVGVSSSDEGDKSWVDIVTSLSWEAASFLKPGAIGGNAMNPDGYVKVKCIAAGSCSQSQLIRGLVFKKHAAHKHMPTKYKNPRLLLISGVLGHSINGLSSFDSMDQEKDDLKSKMDRIEMCHPNVILVEKTVSRDIQESILAKGMTLVLDMKLHRLERVARCTSSPILSCDNLNGQKLRHCDFIYFEKFVEEHDAVGEGGKKPIKTLMFIEGCPTRLGCTILLKGTHSDELKRIKCVIRYAVVMAYHLILETSFLVDQKAMFSTIPAVSVADILPTDKKSRDSASINSSIPSLEYSTENGIVSTDIPICNGLHEKNTNGLNLGSEEFSQFSCEPYNPAVFSGFSAISSSLKKVMGDSFPFASSAPYQSLSAYFGFNGRKPDGMVNESISVLNSLEADENTTMEAKSHSNEVKLLNGGQSLSSPVHLDSNGNISKDDGNNRKELQSKDDINAVLDSQSILVLMSSRNALRGTVCQQSHFSHIMFYKNFDIPLGKFLEENLLNQTRLCDACQELPDAHFYYYAHHYKQLTIQVKRLPQEKSLLGEAEGKIWMWSRCRKCKSGSTKRVLISTTARSLSFGKFLELSLSHYSSSRKLSCGHSLDRDFLYFFGLGHMVAMFRYSSVATYTVSMPPQKLEFSGAIRQEWLSKETQNVYMKGITLFTEVANCLKTIQFDGLGGSIRDFSEVEKMLKQEQEEFEANIKTVVAKKGDPDQAAFKLLSLNRLMWDLLIKSYVWVRRLYPLHSSDVSEKVMQEHDYSKVEGTASRETGSMGNFIEDGNANVKIMFDTSKQVNELPIKEIPISGPLLECNEQAHPSNTQNERIPIVDDLRSRRLSDQKLNLSLDVIPTHLEVGANSSGSTDIQTNHLVSDFKILNKSASLHSPISNMLDSNDWFWKPFADIRQIGIRELQKRLLPKFESVSCSIAEYMPTANQLITEEGTRLHIPLKTDNHVVSDFEGEPSSIIACALALLKDAYEVSEVDDEDDRNESGITSNSTESLHGLTHGATLTSSHSFSRSSSDSDSVHSAGSTSSEESRASRATENHSIEIAMGYAKSLGREKYSVICHYFKQFRELRNWCCPSELDFIASLSRCRNWDAKGGKSKSYFAKTLDDRFIIKEIKKTELDSFLGFSSLYFKHMRESFEFGSQTCLAKVLGIYQVTKRHVKSGKEVKYDPLMVMENLTYNRNITRQYDLKGALYARYNSAADGAGDVLLDQNFVNDMNSSPLYVSHKAKRVLQRAVWNDTSFLNSINVMDYSLLVGVDSQKHELVCGIIDYLRQYTWDKHLETWMKSSLVVPKNVLPTVISPKEYKKRFRKFMSTYFLSVPDHWCSQKSSNPCKLCCSGEEDPSQQKP* 1598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1398 1597 Pfam TCP-1/cpn60 chaperonin family 243 500 IPR002423 GO:0005524
Gso20g1398 1597 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1252 1425 IPR027484 -
Gso20g1398 1597 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1513 1564 IPR002498 GO:0016307|GO:0046488
Gso20g1398 1597 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1343 1510 IPR002498 GO:0016307|GO:0046488
Gso20g1398 1597 SUPERFAMILY SAICAR synthase-like 1304 1566 - -
Gso20g1398 1597 CDD PIPKc_PIKfyve 1305 1566 IPR044769 GO:0000285
Gso20g1398 1597 MobiDBLite consensus disorder prediction 166 218 - -
Gso20g1398 1597 SUPERFAMILY GroEL apical domain-like 304 472 IPR027409 -
Gso20g1398 1597 MobiDBLite consensus disorder prediction 1236 1281 - -
Gso20g1398 1597 SMART PIPK_2 1281 1567 IPR002498 GO:0016307|GO:0046488
Gso20g1398 1597 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 159 1594 - -
Gso20g1398 1597 CDD Fab1_TCP 239 505 - -
Gso20g1398 1597 Gene3D GroEL 303 472 IPR027409 -
Gso20g1398 1597 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1243 1566 IPR002498 GO:0016307|GO:0046488
Gso20g1398 1597 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 159 1594 - -
Gso20g1398 1597 MobiDBLite consensus disorder prediction 1224 1285 - -
Gso20g1398 1597 Gene3D - 1426 1567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1398 Gso-Chr20 44157716 44168157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1398 322 1579 Acyl Lipid Metabolism Gene Families AT1G34260 47.994 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1398 K00921 - gmx:100809696 3132.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1398 20 44157716 44168157 Gso10g1957 10 46566302 46576639 GST