Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1394 ATGTCGTTTGGCAAGAAACTGTTCCTCCAAATTCTGTGGTGGTTTTCCTTGATCGGTCTTAGTTCCCAAAGACGGAGTCATTACAGTTTTGTTGTGAGAGAGGCCAATTATACAAGACTCGGTTCAACAAAAAGCATATTGACAGTGAATGGGAATTTTCCAGGACCAACTATCAAAGTCCACAGAGGAGAAACAATCTTTGTTAATGTTTATAACAAGGGCAACTACAATATCACTTTGCACTGGCATGGAGTGAAGCAGCCAAGGAATCCATGGACAGATGGTCCTGCATACATCACTCAGTGCCCCATACAACCTGGAAGGAGATTCAGACAGAAGTTGATTTTTTCTACAGAGGAAGGGACCATATGGTGGCATGCTCATAGTGACTGGTCAAGAGCCACTATTCATGGGGCTATCTTTGTCTATCCAACCAAGAATACACCCTACCCTTTTCCCAAACCTCATGCAGAGATTCCCATCATATTTGGAGAATGGTGGAAGAGTGATATCAATGAGGTGTTCACACAATTTATTGAATCTGGAGGAGGCCCAAATATATCTGATGCTCTCACGATAAATGGTCAACCTGGGGATTTGTACCCTTGCTCAATGGCAGAAACGTTCGAGTTTCATGTAGAGCAAGGCAGGACTTATCTTCTCCGTGTTGTCAATGCGGCAATGAATCTCATTCTCTTCTTCTCTGTTTCAAAACACAACCTCACTGTTGTTGGTGCTGATGGTATGTTAACCAAGCCATTGGCAAGGGAATACATTTGCATATCACCGGGACAAACAATGGATGTGTTATTGCATGCCAACCAAGAACCTAATCATTACTATCTTGCTGCAAGAGCATATTCAAGTGGTGTTGGTGTTGCCTTTGATAACACCACAACCACTGCTAGAGTAAAGTACAGTGGAAACTACACTCCACGTTCATCTCCTTCATTGCCTAACCTTCCCAACTTTAACGACACGCGTGCTGCGTTGGACTTCATTACAAGCTTGAGAGGCTTATCTGAGAGATACCCTCGCCAGGTCCCAACAAACATCACAACTCAAATAGTGACCACTATTTCAGTTAACACTTTGCCATGCCCTAATAATGGCAGAACCTGCCAGGGACCAAATGGAACCATTTTCGCTGCTAGCATGAACAACATAAGTTTTGACACCCCCAACGTTGACATACTAAAAGCCTATTACTACCATATCAACGGGGTTTACAAACCGGGATTTCCAAGATTTCCACCCTTTATATTTAACTTCACTGGGGATTTTTTGCCTGTAACATTGAATATACCAAAGCAAGGGACTAGGGTTAATGTGTTGAATTATGGTGCAACGGTTGAAATTGTTTTCCAAGGGACAAACGTTGTTGCAGGGATAGACCATCCTATGCATCTCCATGGGTTCAGTTTCCATGTTGTAGGATATGGTTTAGGCAATTTTAACCAAAGCAAGGACCCCTTGAATTTCAATCTTGTTGATCCTCCTTATTTGAACACAGTGATTGTCCCTGTAAATGGTTGGGCTGCTATTAGGTTTGTGGCTACCAACCCTGGAGTATGGTTCATGCACTGTCATCTAGAGCGCCACCAAGCTTGGGGCATGGAGACGGTGTTTATTGTGAAGAATGGAAAGGCTTCAAATGAAACATTACCACCACCACCGCCAGATATGCCCTCTTGTTGA 1698 0.4323 MSFGKKLFLQILWWFSLIGLSSQRRSHYSFVVREANYTRLGSTKSILTVNGNFPGPTIKVHRGETIFVNVYNKGNYNITLHWHGVKQPRNPWTDGPAYITQCPIQPGRRFRQKLIFSTEEGTIWWHAHSDWSRATIHGAIFVYPTKNTPYPFPKPHAEIPIIFGEWWKSDINEVFTQFIESGGGPNISDALTINGQPGDLYPCSMAETFEFHVEQGRTYLLRVVNAAMNLILFFSVSKHNLTVVGADGMLTKPLAREYICISPGQTMDVLLHANQEPNHYYLAARAYSSGVGVAFDNTTTTARVKYSGNYTPRSSPSLPNLPNFNDTRAALDFITSLRGLSERYPRQVPTNITTQIVTTISVNTLPCPNNGRTCQGPNGTIFAASMNNISFDTPNVDILKAYYYHINGVYKPGFPRFPPFIFNFTGDFLPVTLNIPKQGTRVNVLNYGATVEIVFQGTNVVAGIDHPMHLHGFSFHVVGYGLGNFNQSKDPLNFNLVDPPYLNTVIVPVNGWAAIRFVATNPGVWFMHCHLERHQAWGMETVFIVKNGKASNETLPPPPPDMPSC* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1394 565 SUPERFAMILY Cupredoxins 152 333 IPR008972 -
Gso20g1394 565 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Gso20g1394 565 Gene3D - 19 144 IPR008972 -
Gso20g1394 565 SUPERFAMILY Cupredoxins 346 565 IPR008972 -
Gso20g1394 565 ProSitePatterns Multicopper oxidases signature 1. 523 543 IPR033138 -
Gso20g1394 565 SUPERFAMILY Cupredoxins 22 168 IPR008972 -
Gso20g1394 565 TIGRFAM laccase: laccase 26 565 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso20g1394 565 Pfam Multicopper oxidase 32 146 IPR011707 GO:0005507
Gso20g1394 565 Pfam Multicopper oxidase 159 309 IPR001117 -
Gso20g1394 565 CDD CuRO_3_LCC_plant 409 548 IPR034289 GO:0005507
Gso20g1394 565 Gene3D - 371 565 IPR008972 -
Gso20g1394 565 ProSitePatterns Multicopper oxidases signature 2. 528 539 IPR002355 GO:0005507
Gso20g1394 565 Gene3D - 155 342 IPR008972 -
Gso20g1394 565 Pfam Multicopper oxidase 434 548 IPR011706 GO:0005507|GO:0016491
Gso20g1394 565 CDD CuRO_2_LCC_plant 159 306 IPR034285 -
Gso20g1394 565 PANTHER MULTI-COPPER OXIDASE 31 565 IPR045087 -
Gso20g1394 565 PANTHER LACCASE-15 31 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1394 Gso-Chr20 44096861 44100280 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1394 K05909 K19791 gmx:100808617 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1394 20 44096861 44100280 Gso10g1962 10 46636855 46640317 GST