Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1331 ATGACGGACGGCTTCTGGAATCGGCAGCAGCAGCAGCCGCTTCAACCTTCTTCCGCCATGCTCAAACGACCTCGTACTGAATATGATATGTCACCTTCTGGTCTGACAGGGGGTAATGAGATGCATAATTATATTGCTCGAAATGATGACCATACCGGTCATCGAATGCTAAAGGACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGCAGCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTGGGAAGGGGTGTTGGTGGATTACCACGCCATTCACTAACTGATCCTGCTGTCATGGGGCATCCTGGTGGTGGTCATGATCTTGCACGAAATGGACGGAATGTCAATTATGGCGGTCAGTTAACAGTAGATGCAGCTTCCATGCCTGGACCTGAGACTGTACCTCTTCCCCCAGATGCTTCAAGTACTTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAGAATCCAAACATCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAGGTTATAAAGTTGATGAACTCAATCCTGAGTCTAGTCACTTGCGGCTTCAGTTCTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACCTCGTGGCAAGAGGTGA 762 0.479 MTDGFWNRQQQQPLQPSSAMLKRPRTEYDMSPSGLTGGNEMHNYIARNDDHTGHRMLKDTKTLGSAYDRYLQSAGQLTSFNSGEASAIGGVGLGRGVGGLPRHSLTDPAVMGHPGGGHDLARNGRNVNYGGQLTVDAASMPGPETVPLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELNPESSHLRLQFSRFPGPRSGPGPRGKR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1331 253 CDD RRM_RBPMS_like 154 236 - -
Gso20g1331 253 MobiDBLite consensus disorder prediction 1 19 - -
Gso20g1331 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 224 IPR000504 GO:0003723
Gso20g1331 253 Gene3D - 150 240 IPR012677 -
Gso20g1331 253 SUPERFAMILY RNA-binding domain, RBD 132 248 IPR035979 GO:0003676
Gso20g1331 253 SMART rrm1_1 155 229 IPR000504 GO:0003723
Gso20g1331 253 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 253 - -
Gso20g1331 253 PANTHER RNA-BINDING PROTEIN 2 7 253 - -
Gso20g1331 253 MobiDBLite consensus disorder prediction 1 39 - -
Gso20g1331 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 240 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1331 Gso-Chr20 43379690 43384996 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1331 - - gmx:100813445 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1331 20 43379690 43384996 Gso10g2026 10 47266446 47272882 GST