Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1323 ATGTCTCAGGTAGTGGCCACTCGATCCATTCACTCCTCCCTCACGCGCCCCACCTCAGGATCTGCACACCACAGGGCCCAAACGTTGTTGAAGCCTCCAACTTTTGCTTCCAAATTGTTCGGAGCACAAAGGAACAACCCCTCCAAAGTTTGCTCCCGAAGTTGCCTCGTCAATGCGAGGAAATCTGCACCCGCTAAAGTTGTTCCCGTGTCACCCGAGGATGATTCAAAGATTGAGGAAGAGTTGCAGCACTTGCGTGGTATGCAGCAACTTGGCGACACTTCTGTTGGAATGTGGTCAAAACCCACGTTTAGGAGGAAGACAAAGGTTGTTTGCACCATTGGTCCTTCTACCAACACCAGGGAAATGATTTGGAAGCTGGCTGAGGCTGGGATGAATGTTGCCCGATTGAATATGTCTCACGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGGGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACTGGGCAGGAATTCACTTTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGGTGGTATGATGTCTTTGGTGGTTAAGTCTAAGACAGAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGAGACATTTGAATGTTAGAGGAAAAAGTGCAACACTGCCTTCCATAACTGAGAAGGATTGGGATGACATCAAATTTGGAGTGGATAACAAAGTTGACTTCTATGCTGTTTCTTTTGTTAAGGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAGCTGTGATGCTGATATACACGTCATTGTAAAAATTGAAAGTGCAGACTCTATACCAAACTTGCATTCAATTATTACAGCGTCTGATGGGGCCATGGTTGCAAGAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAGGAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCAACAAATATGCTGGAAAGCATGATTGTTCACCCGACACCAACCAGAGCCGAGGTATCCGATATTGCAATTGCTGTTCGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAAGTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAAGCCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAGAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACCCTTGGAACCTCAACTGTTGTCTTCACTAGATCAGGCTTCATGGCTATCCTTTTGAGCCACTATCGACCTTCAGGCACCATATTTGCTTTTACAGATCAAAAGAGGATACAACAGAGGTTGGCTTTGTATCAAGGAGTCTGTCCTATTTACATGGAATTCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCACGCAACCCATATGGAGGTTCCAATCCACTCACAATATCCAGGTCCGAACAGTGTAA 1728 0.4433 MSQVVATRSIHSSLTRPTSGSAHHRAQTLLKPPTFASKLFGAQRNNPSKVCSRSCLVNARKSAPAKVVPVSPEDDSKIEEELQHLRGMQQLGDTSVGMWSKPTFRRKTKVVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKIIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPINLTTGQEFTFTIRRGVGTADCVSVNYDDFVNDVDVGDMLLVDGGMMSLVVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIITICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDAIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDQKRIQQRLALYQGVCPIYMEFSEDAEETFTRALDLLQKQGMVKSGEEVALVQSGTQPIWRFQSTHNIQVRTV* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1323 575 Gene3D - 448 575 IPR036918 -
Gso20g1323 575 MobiDBLite consensus disorder prediction 1 25 - -
Gso20g1323 575 PRINTS Pyruvate kinase family signature 164 180 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 PRINTS Pyruvate kinase family signature 288 302 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Gso20g1323 575 SUPERFAMILY PK beta-barrel domain-like 175 266 IPR011037 -
Gso20g1323 575 Gene3D - 176 269 IPR015806 GO:0004743|GO:0006096
Gso20g1323 575 TIGRFAM pyruv_kin: pyruvate kinase 106 575 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 97 440 IPR015813 GO:0003824
Gso20g1323 575 Pfam Pyruvate kinase, barrel domain 106 441 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 Pfam Pyruvate kinase, alpha/beta domain 463 555 IPR015795 -
Gso20g1323 575 PANTHER PYRUVATE KINASE 39 575 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1323 575 Gene3D - 108 433 IPR040442 -
Gso20g1323 575 SUPERFAMILY PK C-terminal domain-like 424 575 IPR036918 -
Gso20g1323 575 PANTHER PLASTIDIAL PYRUVATE KINASE 2 39 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1323 Gso-Chr20 43263060 43268352 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1323 K00873 - gmx:100809327 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1323 20 43263060 43268352 Gso10g2035 10 47371611 47376671 GST
Gso16g1418 16 34158981 34165351 Gso20g1323 20 43263060 43268352 PCT
Gso9g1029 9 29444163 29453024 Gso20g1323 20 43263060 43268352 PCT
Gso20g1323 20 43263060 43268352 Gso16g1418 16 34158981 34165351 PCT
Gso20g1323 20 43263060 43268352 Gso9g1029 9 29444163 29453024 PCT