Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1321 ATGGAGAAGATGCAGCACGCGGAGGAGCTTGTGAGGGAGTTTCTGGTGTTCCGCGGCTTCACCAACACCCTCGAATCCTACGAGGCCGAATTGCGCACCGACATCGGAAAAGGATTCGAGGTCGACAAGATCCTCGACCTAATCTTCTCCCTCTACGTCCCCAAGTTCCACGCCGATAGCCTCCTCGCGCTCCTCGCTTTCTTCAAGCACTACCTCTCTTCCTCCTCCGACGCGCCGCTTGCCTCCACGCTCTCTAAGTTGGAGACTTCTCTTCTACGCTTCTACGTCGTCCACGCCGTCCAGTGCAACCGCAACGACAAAGTCGTCGACTTCTTCACGCTCTACGGCGCCGAATTGCTGCAGAGGTCCCAAGATTGGACTAACTGGTTCGCTATTCCTTATAAGAAGAATCCACACTTGGATCCCGAGTTTCGGGTTTTTTTCTCCAAGGAGTGGTATCAGGCTTTGCATCTTTCTTCTAGAAACTTCTTCAGCGAGGTCTTCAATGCTACTCGTTTACCTGCGCTGCTGAAGGTTAGTTCAGAGATGAATGCTACTAACCTACTCAAACGAGATATTGTACATTTAAATCTTAAGTTGTCGCAGCTTCAGGCTTCGCTTGATGAGAAAGAGGTGCAGTTACGCCAATTTAGAAGTATGGAAGGGGGGAGTACTGGTTCATCGAGCACTTTGCGTGAAAAAACTGCTCGTATGTCAAAAGATTCTCCGGAGGTTTTTCCAGCTGGTGTTGCACGAGTAGGTCTAACAGAGAGTAGTCAAGATTCAGTTGCGGGTGGATTGGGGAATATTCACTCCGAGTTGATTGGCTCCACGTCTGGCGATGATTCAGCTTTTCTATCAAATGACCATCTGAGGAATGGTGGAGCTGACAATGCAGGTGTAAAAGAAAATGATGGGGAAGTTTATGGGGAAGAATATTTTTCTGAGGTCCAAGTAGAGCACCAGGAGACATTTTTGGGGCACACCAGTCCAATCAGTCGATGTCGCTTCTCTGCATCTGGAAACAATATTGCCAGTGCTTCTCTGGATGGAACTGTCAGGATATGGACATATGATACATCAACTCCAGTGTCTAGAAATGCAACCATATATTGTGGCACTGAAATTTTGTCACTTGACTGGGAATGTAAATCAGACCGCTTGCTTCTCATAGGTACGTCTGATGGGTGCATTAAGGCATGGAATGTGGATGCAAAGAGAGTTGTCTGTGACCTCAACACAACCGAAGCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCAGTGGAACCTATTTTTGTGTCTGCTGCAGCATCTGGAGGGGCTGGTTCTAACTATATTGACCACCTGGGTTTTGCTTCACTAACTGTGTGGAACATGAAGACGTGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCGCCAGCAATTACTTCTCTATGCTTTAATCACAATGGAAAGATTTTGGCAGCTTCTGCTGTTGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCAGCACATGATTCTTCCATCAGTTCTATTCTGTTTGGACCAGATGAGACTAGCATTTTTAGCCTGGGCTGTGATGGGAAGATTTTTGAGTGGAGTTTGCAAAATCAAGGTCAAATCCTGTGGTCAAGAGACTGTAGTAGGTTCTGTTACCCCCTCAATGATTCAAAATATTGCAGACATGAGATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCATTTAGAGCACCCATATACCAGGTTCATGGTCATTTGAGTGGATGGAGAACACTTCCGCATGGTGCTCCTATTACTGCTGTGGATTGGCATCCAACCCTGCCCATTTTTTTGACTGGATCAGCTGATAACTCTGTCCGAGTAACATCTTTATCATAG 1926 0.4663 MEKMQHAEELVREFLVFRGFTNTLESYEAELRTDIGKGFEVDKILDLIFSLYVPKFHADSLLALLAFFKHYLSSSSDAPLASTLSKLETSLLRFYVVHAVQCNRNDKVVDFFTLYGAELLQRSQDWTNWFAIPYKKNPHLDPEFRVFFSKEWYQALHLSSRNFFSEVFNATRLPALLKVSSEMNATNLLKRDIVHLNLKLSQLQASLDEKEVQLRQFRSMEGGSTGSSSTLREKTARMSKDSPEVFPAGVARVGLTESSQDSVAGGLGNIHSELIGSTSGDDSAFLSNDHLRNGGADNAGVKENDGEVYGEEYFSEVQVEHQETFLGHTSPISRCRFSASGNNIASASLDGTVRIWTYDTSTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGAGSNYIDHLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGCDGKIFEWSLQNQGQILWSRDCSRFCYPLNDSKYCRHEMALDANGRRLLVTSSSFRAPIYQVHGHLSGWRTLPHGAPITAVDWHPTLPIFLTGSADNSVRVTSLS* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1321 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515
Gso20g1321 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 641 - -
Gso20g1321 641 SMART WD40_4 601 639 IPR001680 GO:0005515
Gso20g1321 641 SMART WD40_4 318 357 IPR001680 GO:0005515
Gso20g1321 641 SMART WD40_4 363 402 IPR001680 GO:0005515
Gso20g1321 641 SMART WD40_4 506 545 IPR001680 GO:0005515
Gso20g1321 641 SMART WD40_4 462 503 IPR001680 GO:0005515
Gso20g1321 641 MobiDBLite consensus disorder prediction 219 241 - -
Gso20g1321 641 SUPERFAMILY WD40 repeat-like 315 637 IPR036322 GO:0005515
Gso20g1321 641 Coils Coil 193 220 - -
Gso20g1321 641 MobiDBLite consensus disorder prediction 219 233 - -
Gso20g1321 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 513 548 IPR001680 GO:0005515
Gso20g1321 641 Gene3D - 448 641 IPR015943 GO:0005515
Gso20g1321 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 641 IPR001680 GO:0005515
Gso20g1321 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 360 - -
Gso20g1321 641 Pfam Anaphase-promoting complex subunit 4 WD40 domain 472 525 IPR024977 -
Gso20g1321 641 PANTHER OS05G0299300 PROTEIN 1 640 - -
Gso20g1321 641 Pfam WD domain, G-beta repeat 322 356 IPR001680 GO:0005515
Gso20g1321 641 Pfam WD domain, G-beta repeat 604 637 IPR001680 GO:0005515
Gso20g1321 641 Gene3D - 269 447 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1321 Gso-Chr20 43241203 43248368 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1321 K24760 - gmx:100795332 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1321 20 43241203 43248368 Gso10g2044 10 47445860 47451834 GST