Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2044 ATGGAGAAGAAGATGCAGCACGCGGAGGAGCTAGTGAGGGAGTTCCTGGTGTTCCGTGGCTTCACCAACACCCTCGAATCCTACGATGCCGAATTGCGCACCGACATCGGAAAGGGATTCGAAGTCGACAAGATCCTCGACCTAATCTTCTCCCTCTACGTCCCCAAGTTCCACGCCGATAGCCTCCTCGCGCTCCTCGGTTTCTTCAAGCACTACCTCTCTTCCTCCTCCGACTCGCCGCTCCTCTCCACGCTCTCTAAGTTGGAGACTTCTCTTCTGCGCTTCTACGTCGTCCACGCCGTCCAGTGCAACCGCAATGACAAAGTCGTCGACTTCTTCGCGCTCTACGGTGCCGAATTGCTGCAGAGCTCGCAAGATTGGACTCACTGGTTCGCGATTCCTTATAAGAAAAACCCGCACTTGGATCCCGAGTTTCGAGTTTTTTTCTCCAAGGAGTGGTATCAGGCTTTGCATCTTTCTTCTAGAAACTTCTTCAGCGAGGTCTTCAATGCGACTCGTCTGCCTGCGCTACTGAAGGTCAGTTCAGAGATGAATGCTACTAACCTACTCAAACGAGATATCGTACATTTAAATCTTAAGTTGTCACAACTTCAAGCTTTGCTTGATGAGAAAGAGGCACAGTTACGCCAATTTAGAAGTATGGAAGGGGGGAGTACTGGTTCATCGAGCAATTTGCGTGAAGAAACTGCTCGTGTGTCGAAAGATTCTTCAGAGCTTTTTCCAACTGGCATTCCACAAGTAGGTCAAACAGAGATTAGCCAAGATTCAGTTGCGGGTGGACTGGGGAATATTCGTTCGGAGTTGATTGGCTCCACATCTGGCAATGATTCTACTACTTTTCTATCGAATGACCGTATGAGAAATGGCAGAGCTGACAATGCCACTCTAAAAGACAACAATGGGGAAGTTTTTGGGGAAGAAGATTTTGCTGAGGTGAAAGTAGAGTACCAGGAGACATTTTTGGGGCACACCGGTCCAATCAGTCGGTGTTGCTTCTCTGCATCTGGAAACAATATTGCCAGTGCTTCTCTGGATGGAACTGTCAGGATATGGACATATGATACATCAACTCCAGTGTCTAGAAATGCAACCATATATTGTGGCACTGAAATTTTGTCACTTGACTGGGAATGTAAATCAGACCGCTTGCTTCTTATAGGTACATCCGATGGGTGCATTAAGGCATGGAATGTGGATGCAAAGAGAGTTGTCTGTGACCTCAACACAACCGAAGCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCTGTGGAACCTATTTTTGTGTCTGCAGCAGCATCTGGAGGGGCTGGTTCTAACTATATTGACAACCTGGGTTTTGCTTCACTTACTGTGTGGAACATGAAGACATGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCACCAGCAATTACTTCTCTATGCTTTAATCACAATGGAAAGATTTTGGCAGCTTCTGCCGTTGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCAGCACATGATTCTTCCATCAGTTCTATTCTGTTTGGACCAGATGAGACTAGCATTTTTAGCCTGGGCTCTGATGGGAAGATTTTTGAGTGGAGTTTGCAAAATCAAGGTCAAATCCTGTGGTCGAGAGACTCTAGTAGGTTCTGTTACCCCTTCAATGATTCAAAATATTGCAGACATGAGATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCATTTAGAGCACCCATATACCAGGTTCATGGTCATTTGAGTGGATGGAGAACACTTCCGCACGGTGCTCCTATTACTGCTGTGGATTGGCATCCGACCCTGCCCATTTTCTTGACTGGATCAGCTGATAACTCTGTCCGAGTAACATCTTTATCATAG 1932 0.4648 MEKKMQHAEELVREFLVFRGFTNTLESYDAELRTDIGKGFEVDKILDLIFSLYVPKFHADSLLALLGFFKHYLSSSSDSPLLSTLSKLETSLLRFYVVHAVQCNRNDKVVDFFALYGAELLQSSQDWTHWFAIPYKKNPHLDPEFRVFFSKEWYQALHLSSRNFFSEVFNATRLPALLKVSSEMNATNLLKRDIVHLNLKLSQLQALLDEKEAQLRQFRSMEGGSTGSSSNLREETARVSKDSSELFPTGIPQVGQTEISQDSVAGGLGNIRSELIGSTSGNDSTTFLSNDRMRNGRADNATLKDNNGEVFGEEDFAEVKVEYQETFLGHTGPISRCCFSASGNNIASASLDGTVRIWTYDTSTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGAGSNYIDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDGKIFEWSLQNQGQILWSRDSSRFCYPFNDSKYCRHEMALDANGRRLLVTSSSFRAPIYQVHGHLSGWRTLPHGAPITAVDWHPTLPIFLTGSADNSVRVTSLS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2044 643 MobiDBLite consensus disorder prediction 219 234 - -
Gso10g2044 643 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 362 - -
Gso10g2044 643 MobiDBLite consensus disorder prediction 219 251 - -
Gso10g2044 643 Pfam WD domain, G-beta repeat 606 639 IPR001680 GO:0005515
Gso10g2044 643 Pfam WD domain, G-beta repeat 324 358 IPR001680 GO:0005515
Gso10g2044 643 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 643 IPR001680 GO:0005515
Gso10g2044 643 Gene3D - 228 445 IPR015943 GO:0005515
Gso10g2044 643 Gene3D - 450 643 IPR015943 GO:0005515
Gso10g2044 643 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 550 IPR001680 GO:0005515
Gso10g2044 643 Coils Coil 194 221 - -
Gso10g2044 643 Pfam Anaphase-promoting complex subunit 4 WD40 domain 474 527 IPR024977 -
Gso10g2044 643 SMART WD40_4 508 547 IPR001680 GO:0005515
Gso10g2044 643 SMART WD40_4 464 505 IPR001680 GO:0005515
Gso10g2044 643 SMART WD40_4 603 641 IPR001680 GO:0005515
Gso10g2044 643 SMART WD40_4 365 404 IPR001680 GO:0005515
Gso10g2044 643 SMART WD40_4 320 359 IPR001680 GO:0005515
Gso10g2044 643 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 368 IPR001680 GO:0005515
Gso10g2044 643 SUPERFAMILY WD40 repeat-like 321 639 IPR036322 GO:0005515
Gso10g2044 643 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 609 643 - -
Gso10g2044 643 PANTHER OS05G0299300 PROTEIN 1 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2044 Gso-Chr10 47445860 47451834 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2044 K24760 - gmx:100788591 1266.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2044 10 47445860 47451834 Gso10g2044 10 47445860 47451834 ECH
Gso20g1321 20 43241203 43248368 Gso10g2044 10 47445860 47451834 GST