Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso20g1274 | ATGAATTCGGTAACCCTTTTAGGTTCAAAGAGGGTCCATAAATGTTCCCATTCTTTGATTATTTTGCGGAGATTATGTAACCATCCGTTTGATGGTGATGGGTTCGAATTTATTGAGGAACCTTTGAAAAAACTGGGTTCAGATTATGATTCCACCGTGGATGAAAGGCTCCATGTGAACGAGGATTGGGGTTTTAAGCAAAAGCAATTCTCACTTAGAAAAGGATTCTTAGAAACTGTTAAGTTAGATGCTAAGAGGGTCCTTGAGGTTCTCCGGCAAGATGGTCCCGGTCTGGATGCGAGGTTGGTTTTAGGTGAGTTGCATGTAAGGCCATCAGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTGTCAGAATAAGACCAGGTGTGCAAAGCTGGCATATAAGTTTTTTGTGTGGTGCAGTCAGCAAGAGGGTTACCAGCACACTGTGAATGCGTATCACCTAGTTATGAGCATATATGCTGAGTGCGAGGAGTTTAAGGCATTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGGCTTCCGGCTACTGCTCGTACTTTCAATATATTGATCCGTACTTGTGGTGAGGCAGGATTGGCTAAGAATTTGGTGGAGAGGTTCATAAAATCAAAGACATTTAACTTCAGGCCTTTTAAGCACTCCTACAATGCAATCCTGCATGGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAATGGGTTTATCAACAGATGTTGCTTGATGGATTTCCTTCAGATATTTTAACTTATAATATTGTCATGTATGCCAAGTACAGACTAGGAAAGTTGGATCAATTTCACAGACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCACACTTTCAATATTCTTCTTCATGTTCTTGGCAAGGGGGACAAACCGCTTGCAGCTCTCAATCTTTTAAATCACATGAGAGAAATGGGTATAGAACCAACGGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAATACTTTTTTGATGAAATGATAAAGAATGAATGCAGGCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGATTGAGAAAGCACTGGAAATGTATCAAGATATGATTTCTAGAGAACAAGTTCCAAATGTTTTTACATACAATTCAATAATTCGGGGATTATGTATGGCAGGAAAATTTGATGAAGCGTGCTCAATGCTCAAGGAAATGGAGACCAAAGGTTGTAGTCCAAATTCTGTTGTCTATAATACATTAGCGAGTTGTTTGAGGAATGCTGGAAAGACTGCCGATGCTCATGAAGTGATAAGACAGATGACGGAGAAAGTGAAGCATGCTGACATACATTCAAGATTCAAAGGACATAAAGCTTAG | 1443 | 0.4012 | MNSVTLLGSKRVHKCSHSLIILRRLCNHPFDGDGFEFIEEPLKKLGSDYDSTVDERLHVNEDWGFKQKQFSLRKGFLETVKLDAKRVLEVLRQDGPGLDARLVLGELHVRPSGLLVREVLFGILKNINCQNKTRCAKLAYKFFVWCSQQEGYQHTVNAYHLVMSIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKNLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFPSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNECRPDVVAYTVMITGYVVAGEIEKALEMYQDMISREQVPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYNTLASCLRNAGKTADAHEVIRQMTEKVKHADIHSRFKGHKA* | 481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso20g1274 | 480 | Pfam | PPR repeat family | 260 | 306 | IPR002885 | - | |
| Gso20g1274 | 480 | Pfam | PPR repeat family | 155 | 201 | IPR002885 | - | |
| Gso20g1274 | 480 | Pfam | PPR repeat family | 364 | 412 | IPR002885 | - | |
| Gso20g1274 | 480 | Pfam | PPR repeat | 228 | 257 | IPR002885 | - | |
| Gso20g1274 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 155 | 189 | IPR002885 | - | |
| Gso20g1274 | 480 | PANTHER | OS10G0506000 PROTEIN | 1 | 479 | - | - | |
| Gso20g1274 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 330 | 364 | IPR002885 | - | |
| Gso20g1274 | 480 | Pfam | PPR repeat | 430 | 463 | IPR002885 | - | |
| Gso20g1274 | 480 | Pfam | PPR repeat | 325 | 357 | IPR002885 | - | |
| Gso20g1274 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 400 | 434 | IPR002885 | - | |
| Gso20g1274 | 480 | Gene3D | Tetratricopeptide repeat domain | 324 | 394 | IPR011990 | GO:0005515 | |
| Gso20g1274 | 480 | Gene3D | Tetratricopeptide repeat domain | 248 | 323 | IPR011990 | GO:0005515 | |
| Gso20g1274 | 480 | Gene3D | Tetratricopeptide repeat domain | 395 | 468 | IPR011990 | GO:0005515 | |
| Gso20g1274 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 260 | 294 | IPR002885 | - | |
| Gso20g1274 | 480 | SUPERFAMILY | TPR-like | 365 | 467 | IPR011990 | GO:0005515 | |
| Gso20g1274 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 295 | 329 | IPR002885 | - | |
| Gso20g1274 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 435 | 465 | IPR002885 | - | |
| Gso20g1274 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 365 | 399 | IPR002885 | - | |
| Gso20g1274 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 297 | 331 | IPR002885 | - | |
| Gso20g1274 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 402 | 436 | IPR002885 | - | |
| Gso20g1274 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 437 | 465 | IPR002885 | - | |
| Gso20g1274 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 263 | 295 | IPR002885 | - | |
| Gso20g1274 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 334 | 366 | IPR002885 | - | |
| Gso20g1274 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 367 | 401 | IPR002885 | - | |
| Gso20g1274 | 480 | Gene3D | Tetratricopeptide repeat domain | 115 | 238 | IPR011990 | GO:0005515 | |
| Gso20g1274 | 480 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 479 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso20g1274 | Gso-Chr20 | 42778504 | 42782527 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso20g1274 | 181 | 473 | Miscellaneous Gene Families | AT4G11690 | 28.328 | 8.65e-38 | 143 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso20g1274 | - | - | gmx:100792512 | 979.933 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso20g1274 | 20 | 42778504 | 42782527 | Gso10g2103 | 10 | 48047407 | 48051208 | GST |