Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2103 ATGAATGCAATAACCCTTTTAGGTCCAAAGAGGGTGCAAAATTTTTCCCATTCTTTGATTATTTTGCGGAGATTATGTAGCCATCCGTTTGATGGTAACGGATTCGAATTTATTGAGGAGCCTTTGAAAAAACTAGGTCCAGATTATGATACCAATGTGGATGAAAGGCTCCATTTGAAAGAGGATTGGGGCTATAACCGAAAACAGTTTTCACTTAGAAAAGGGTTCTTAGAAACTGTTAAGTTAGATGCTAAGAGGGTCCTTGAGGTTCTCCGGCAAGACGGTCCCGGTCTCGATGCGAGGTTGGTTTTAGGTGAGTTGCATGTAAGGCTATCAGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGCACATAAATTGTGAGAATAAGACCAGGTGTGCAAAGCTGGCATATAAGTTTTTTGTGTGGTGCAGTCAGCAAGAGGGTTACCAGCACACTGTGAATGCGTATCACCTAGTTATGAACATATATGCTGAGTGCGAGGAGTTTAAGGCATTGTGGAGGTTGGTTGATGAGATGGTTGAGAAAGGTCTTCCGGCTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGTGAGGCGGGTTTGGCTAAAAGTTTGGTGGAGAGGTTCATAAAATCAAAGACGTTTAACTTTAGGCCTTTTAAGCACTCCTACAATGCCATCCTGCATGGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAACAGCTGTTGCTTGATGGATTTTCATCAGATATTTTAACTTATAATATTGTCATGTATGCCAAGTACAGACTAGGAAAGTTGGATCAGTTTCACAGACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCATACATTCAATATTCTTCTTCATGTTCTCGGCAAGGGGGACAAACCACTTGCAGCTCTCAATCTTTTAAATCACATGAGAGAAATGGGTATAGAACCAACTGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATAAAGAATGGATGCATCCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGAAAATTTGATGAAGCGTGCTCAATGCTCAAGGAAATGAAGACCAAAGGTTGTAGTCCAAATTCATTTGTCTATAATACATTAGCGAGTTGTTTGAGGAATGCTGGAAAGACTGCTGATGCTCATGAAGTGATAAGACAAATGACGGAGAAGGGGAAGTATGCTGACATACATTCAAGATTCAGAGGGCACAAGGCTTAG 1338 0.4058 MNAITLLGPKRVQNFSHSLIILRRLCSHPFDGNGFEFIEEPLKKLGPDYDTNVDERLHLKEDWGYNRKQFSLRKGFLETVKLDAKRVLEVLRQDGPGLDARLVLGELHVRLSGLLVREVLFGILKHINCENKTRCAKLAYKFFVWCSQQEGYQHTVNAYHLVMNIYAECEEFKALWRLVDEMVEKGLPATARTFNILIRTCGEAGLAKSLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQLLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGKFDEACSMLKEMKTKGCSPNSFVYNTLASCLRNAGKTADAHEVIRQMTEKGKYADIHSRFRGHKA* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2103 445 Pfam PPR repeat family 364 411 IPR002885 -
Gso10g2103 445 Pfam PPR repeat family 260 306 IPR002885 -
Gso10g2103 445 Pfam PPR repeat family 155 201 IPR002885 -
Gso10g2103 445 TIGRFAM PPR: pentatricopeptide repeat domain 403 435 IPR002885 -
Gso10g2103 445 TIGRFAM PPR: pentatricopeptide repeat domain 367 401 IPR002885 -
Gso10g2103 445 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Gso10g2103 445 TIGRFAM PPR: pentatricopeptide repeat domain 334 366 IPR002885 -
Gso10g2103 445 TIGRFAM PPR: pentatricopeptide repeat domain 297 331 IPR002885 -
Gso10g2103 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Gso10g2103 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Gso10g2103 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Gso10g2103 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Gso10g2103 445 Pfam PPR repeat 325 357 IPR002885 -
Gso10g2103 445 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 378 444 - -
Gso10g2103 445 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 380 - -
Gso10g2103 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Gso10g2103 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Gso10g2103 445 PANTHER OS10G0506000 PROTEIN 1 380 - -
Gso10g2103 445 PANTHER OS10G0506000 PROTEIN 378 444 - -
Gso10g2103 445 Gene3D Tetratricopeptide repeat domain 117 290 IPR011990 GO:0005515
Gso10g2103 445 Gene3D Tetratricopeptide repeat domain 311 444 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2103 Gso-Chr10 48047407 48051208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2103 150 431 Glycosyltransferase AT1G05670 26.224 4.67e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2103 - - gmx:100805547 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2103 10 48047407 48051208 Gso10g2103 10 48047407 48051208 ECH
Gso20g1274 20 42778504 42782527 Gso10g2103 10 48047407 48051208 GST