Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1264 ATGGGAAAGCAAAAGCAACAAGTGATTTCCCGCTTCTTCGCTCCCAAACCCAAATCCCCTCCTCCTCCTCCTCCTCCTCCTCCTAAAATCTCCGCCACCGTCACTTTCTCCCCCGCCAAACGCCGCCTTACTTCCAACTTCACCACCTCTCGCAAACACCCCAAACTCTCCCCCCACACCCAAAACCCCGTTCCCCCTTCACTCCACCAACGCTTCCTCCAGAAGCTTCTCGAACCTTCCACCCCTCAACAACACCCCGCTTCCTCTTCCAAACCCCCAACCTACACTCCCCTCGAACAGCAAGTCCTTGACCTCAAAGCCAAACACCCCGACGTCCTCCTCATGGTGGAGGTCGGTTACAAGTACCGTTTCTTCGGCCAAGACGCCGAACACGCCTCCAGAGTCTTGGGCATTTACGCACACATGGACCACAACTTCTTAACCGCTAGCATACCAACTTTTCGGCTAAATGTCCACGTCAGGAGGCTCGTCACTGCCGGCTACAAGGTCGGCGTTGTCAAGCAGACCGAGACCGCCGCCATCAAGGCCCACGGCTCCAACCGCTCCGCCCCCTTCGAGCGCGGCCTGTCCGCGCTCTACACCAAGGCCACGCTCGAGGCCGCGCCGGACTTGGGGGGAGCGGAGGATGGGTGCGGCGGAGAGAGCAATTACTTGCTCTGTGTTGTGGAGAAGAGTGTTTTGGATGAGAAGGGTGGTGTTGATGCGAGGATTGGGATTGTTGCTGTGGAGATTTCGACCGGGGATGTTGTTTTTGGGGAGTTTTGTGATGGTTTTCTGAGGAGTGCGCTTGAGGCTGTTGTTCTGAACTTGTCTCCGGCTGAGTTGCTTCTCGGTGACCCTCTTTCGAAGCAAACGGAGAAGTTATTGCTGGATTTTGCTGGACCTGCCTCAAATGTTCGTGTGGAGCGTTTTTCACGAGATTGCTTCATTGATGGGGGTGCTCTTGCTGAAGTTATGACCTTGTACGAGAACATGCACATAGACAGTCCATCAGATTCAATACTAAGCAATGATTTGACTGAGAACAGAAGTCAAAAGTTAATAATCAAGGAGGTGATGAACATGCCAGATTTGGCTGTCCAAGCTTTGGCCTTAACTATTCGTCATTTGAAGGAATTTGGTTTTGAAAGAATTCTGTGTTCGGGAGCTTCTATTAGGCCTTTCTCAAGCAATACGGAAATGACCCTCTCAGCCAATGCACTTCAACAACTGGAGGTTTTAAAAAATAACAGTGATGGATCTGAGATCGGTTCTTTGCTGCAAATTATGAATCGTACTCTTACTATATTTGGCTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTGTGTGATCAAACCTTAATTTCTGCTCGTCTTCATGCTGTATCTGAAATTGCACAGTCCATGGGATCTTGTAATAGTGTGAAGAATCTTGTACGTGTTGAGGAAGATCCTGACGTAGCAATTGTGCAACCTGAGTTAGCATACACACTTTCACTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAACGTGGAATTACTAGAATTTTCCATTGCACTGCTACCCCATCTGAGGTCATTAGAGCTCGGGAGGCTTTCAAGCTGGCAGTGGAAAAACTAGATTCAATGATTGACTTCTATCGCAAACGGCTTGGAATGAAAAATTTGGAATTCATTAGTATTTCTGGAACAACCCATTTGATTGAGTTATCAACTGATGTAAAGGTTCCTTCAAACTGGGTCAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTATTGACAGCATTAGACAAGTTATCATTAGCAAAAGAGGAGCTCACTGTTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTACGGAGTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTTTGCCCAGTGTTTGTAGATGATCATGAGCCTGTTCAGATACAGATTTCTTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAACATGCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGTTATATTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAATTGCATGTCCTGGATAGGATCTACACCCGGATGGGTGCATCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCGCATATACTCAATAGTTGCACAGAACATTCACTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCGACATTGCATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACTCACTATCCCAAGATTGCCAGCCTGGCAACTGAATTTCCTGGCTCTGTGGCAGCATATCACGTGTCACATCTGATCTCACATGATGCAAGTAAAAATTCCAACTTGGATCATGATGTCACTTACCTATACAAGCTAGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTACCTTCTCATTGCATCAGTCGAGCTATTGTCATGGCTTCTAAATTAGAAGCACTAGTAAACAGTAGAATACATGGTAGATCAACAAAGGAGCTATTATTGGACACGCTGGTGATTGGTCAAGAAAAAGAACAGCTTATGGCTCAATCACTTGATCGTCCACATAAAGAGTTTGATATGGCTTACAAAGATTTCTATTTAAACTTAAAAGCTGCAACACAAGATGATGACTGGGCAAAAAGCTTTCATCTATTGGAACATGCCAGAAGCATTGCAAAGAAATTAATTGGCAGATCAATGCAGTATGTGTAA 2976 0.4597 MGKQKQQVISRFFAPKPKSPPPPPPPPPKISATVTFSPAKRRLTSNFTTSRKHPKLSPHTQNPVPPSLHQRFLQKLLEPSTPQQHPASSSKPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKYRFFGQDAEHASRVLGIYAHMDHNFLTASIPTFRLNVHVRRLVTAGYKVGVVKQTETAAIKAHGSNRSAPFERGLSALYTKATLEAAPDLGGAEDGCGGESNYLLCVVEKSVLDEKGGVDARIGIVAVEISTGDVVFGEFCDGFLRSALEAVVLNLSPAELLLGDPLSKQTEKLLLDFAGPASNVRVERFSRDCFIDGGALAEVMTLYENMHIDSPSDSILSNDLTENRSQKLIIKEVMNMPDLAVQALALTIRHLKEFGFERILCSGASIRPFSSNTEMTLSANALQQLEVLKNNSDGSEIGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTLISARLHAVSEIAQSMGSCNSVKNLVRVEEDPDVAIVQPELAYTLSLVLTTLGRAPDIQRGITRIFHCTATPSEVIRAREAFKLAVEKLDSMIDFYRKRLGMKNLEFISISGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVLTALDKLSLAKEELTVACRAAWNSFLTEFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVCPVFVDDHEPVQIQISSGRHPVLETTLQDNFVPNDTNMHADGEYCQIVTGPNMGGKSCYIRQVALIVIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSHILNSCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIASLATEFPGSVAAYHVSHLISHDASKNSNLDHDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSTKELLLDTLVIGQEKEQLMAQSLDRPHKEFDMAYKDFYLNLKAATQDDDWAKSFHLLEHARSIAKKLIGRSMQYV* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1264 991 MobiDBLite consensus disorder prediction 1 67 - -
Gso20g1264 991 Pfam MutS family domain IV 532 612 IPR007861 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 SUPERFAMILY DNA repair protein MutS, domain I 89 204 IPR016151 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 ProSitePatterns DNA mismatch repair proteins mutS family signature. 786 802 IPR000432 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 SUPERFAMILY DNA repair protein MutS, domain II 220 293 IPR036678 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 Gene3D - 513 629 - -
Gso20g1264 991 SMART mutATP5 705 902 IPR000432 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 905 IPR027417 -
Gso20g1264 991 SMART DNAend 421 688 IPR007696 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 PIRSF Msh6 86 537 IPR017261 GO:0006298|GO:0030983
Gso20g1264 991 PIRSF Msh6 523 944 IPR017261 GO:0006298|GO:0030983
Gso20g1264 991 Gene3D - 399 450 - -
Gso20g1264 991 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 532 982 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Gso20g1264 991 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 76 537 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Gso20g1264 991 Pfam MutS domain I 96 206 IPR007695 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 Pfam MutS domain III 406 653 IPR007696 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 MobiDBLite consensus disorder prediction 37 67 - -
Gso20g1264 991 Pfam MutS domain II 223 293 IPR007860 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 Pfam MutS domain V 708 905 IPR000432 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 Gene3D DNA repair protein MutS, domain I 85 211 IPR016151 GO:0005524|GO:0006298|GO:0030983
Gso20g1264 991 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 532 982 - -
Gso20g1264 991 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 76 537 - -
Gso20g1264 991 SUPERFAMILY DNA repair protein MutS, domain III 405 658 IPR036187 -
Gso20g1264 991 MobiDBLite consensus disorder prediction 15 32 - -
Gso20g1264 991 Gene3D - 661 938 IPR027417 -
Gso20g1264 991 Gene3D MutS, connector domain 219 398 IPR036678 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1264 Gso-Chr20 42708173 42716965 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1264 K08736 - gmx:100789883 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1264 20 42708173 42716965 Gso10g2112 10 48113000 48115653 GST