Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2112 ATGTTATGTTTATCAACTGATGTAAAGGTTCCTTCAAACTGGATCAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTAAAGTAGTGACAGCATTAGACAAGTTATCATTAGCAGAAGAGGAGCTCACTGTTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCCTTAGATTGTCTGCATTCATTTGCCATTCTTTCAAGAAATAAGGGTTATGTTCGCCCAGTGTTTGTAGATGATCATGAGCCTGTTCAAATACAAATTTGTTCTGGTAGACATCTGGTTTTAAAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAACATGCATGCAGATGGAGAGAACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGCTACATTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTTCATGTCCTGGATAGAATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAATTAAGTGAGACTTCACATATACTCCATAGCTGCACAGAACATTCACTGGTTGTCATAGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCGACGTTGTATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACACACTATCCCAAGATTGCCAGTCTGGCAACTGAATTTCCTGGCTCTGGCAGCGTATCACGTGTCACATCTGACCTCACACGATGCAAGTAA 858 0.4289 MLCLSTDVKVPSNWIKVNSTKKTIRYHPPKVVTALDKLSLAEEELTVACRAAWNSFLRDFSKHYAEFQAAVQALAALDCLHSFAILSRNKGYVRPVFVDDHEPVQIQICSGRHLVLKTTLQDNFVPNDTNMHADGENCQIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSHILHSCTEHSLVVIDELGRGTSTHDGMAIAHATLYYLLKQKRSMVLFVTHYPKIASLATEFPGSGSVSRVTSDLTRCK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2112 285 SMART mutATP5 136 285 IPR000432 GO:0005524|GO:0006298|GO:0030983
Gso10g2112 285 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 8 271 - -
Gso10g2112 285 Gene3D - 9 60 - -
Gso10g2112 285 Pfam MutS domain V 139 269 IPR000432 GO:0005524|GO:0006298|GO:0030983
Gso10g2112 285 ProSitePatterns DNA mismatch repair proteins mutS family signature. 217 233 IPR000432 GO:0005524|GO:0006298|GO:0030983
Gso10g2112 285 Gene3D - 92 284 IPR027417 -
Gso10g2112 285 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 8 271 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Gso10g2112 285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 268 IPR027417 -
Gso10g2112 285 Gene3D - 61 84 - -
Gso10g2112 285 SUPERFAMILY DNA repair protein MutS, domain III 8 89 IPR036187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2112 Gso-Chr10 48113000 48115653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2112 K08736 - gsj:114371827 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2112 10 48113000 48115653 Gso10g2112 10 48113000 48115653 ECH
Gso20g1264 20 42708173 42716965 Gso10g2112 10 48113000 48115653 GST