Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1240 ATGAGTTGGGTGTACGAGCAATTTATATGTGCATTTCTTGTTGGGTGCACGTTCCTTAGTGTATTATCTCATCCTGATAAAGCTCCAAAGTACACATTTCTAAGAGAAGCAGCATCTGCTCCACAAATCTTAACTTATGATTACATAGTGATTGGTGGAGGAACATGTGGGTGTCCACTAGCAGCAACTCTCTCACAAGGTGCAACAGTCTTAGTCCTTGAAAGGGGAGGCTCTCCTTACACAAACCCTGAGCAAATCAACATAAATAACTTCGTGAATTCCCTCGCTGACATAAGCCCTTCATCATTTTCCCAGCCATTTATATCCAGAGACGGGGTCCTCAATTCGCGGGCCCGTGCCCTTGGTGGTGGCTCTGTCTTGAATGCAGGGTTCTATTCAAGGGCTAGCTCCAAGTACATAGTGGATTCTGGTTGGAATGAAACTTTGGCTAAGGACTCATATCAATGGGTTGAAAAAAAAGTGGCCTTTGAGCCCCCTATGCTGCAGTGGCAATCAGCAGTGAAGGATGGTTTGCTTGAAGTAGGTGTGTTGCCTTACAATGGTTTCACTTTTGATCATTTATATGGGACTAAGGTTGGAGGGACAATTTTTGACAAGGAGGGTAACAGGCACACTGCTGCTGATTTGTTAGAGTATGCTGATCCCAAGAGGATTTCCGTTTATCTCCATGCCACAGTGCAGAAGATACTATTTAAGTATAACACAGAAAAAAGAAGGCAACAAGCTTATGGAGTAATTTTCAAAGATGCATTGGGGGTGATGCATAGAGCATACCTAAGCACAAAAGGAAAAAGTGAGATAATCTTATCAGCTGGTGCAATTGGAAGCCCACAGTTGCTGATGCTGAGTGGGATTGGTCCTGCTAACCATCTTCAGGCTCATGGAATCAAAGTGGTTTTGGATCAGCCCTTGGTGGGTCAAGGGATGGCAGATAATCCATTGAACGTTCTATTGGTTCCTTCCCCTGTGCCTGTTGAAGTCTCTCTGGTCCAAACAGTGGGCATCACTAAGTTTGGTAGCTTCATTGAAGCAGCCAGTGGATTGAGCTTGGGCCATTCTTGGTCTGAAAGGCTTCAAGGGATTTTTGAATTTGTGTCAAACCAGTCTGGCCAGCCTTCCATGTTTCCCCCAGTTGCAGACACCATTAGATCTTTAGCAAATCCAATTCTCAAAGGAGGAGTGCTACTTGAAAAGATCATAGGACCACGGTCCACGGGTCATTTGGAGCTCATAAACACAAACCCCAATGATAATCCATCAGTTACCTTCAACTATTTTAAGGACCCAGAAGACTTAAGGAAGTGTGTTGAAGGCATGAGAACCATCATAGATGTGATAAACTCAAAAGCATTCTCAAAGTTCCGCTACCATAACATGCCGGTCCAATCTCTAATAGACTTGATGTTGCACTTGCCAGTGAACTTGAGGCCTAAACATGCTAATGCTGCCTTTTCTTTAGAACAGTATTGCATAGACACTGTGCTAACAATTTGGCATTACCATGGGGGGTGCCAATCTGGTAAAGTTGTTGATCATAATTATAAGGTTATTGGTGTGGAAGCTTTGAGGGTAATTGATGGATCCACTTTTCATCGCTCACCTGGTACAAATCCTCAAGCTACTGTAATGATGCTTGGAAGGTATATGGGAGAAAAGATTATAAAGAAAAGATTCTTCCATGGGCGGAAGTGA 1713 0.4349 MSWVYEQFICAFLVGCTFLSVLSHPDKAPKYTFLREAASAPQILTYDYIVIGGGTCGCPLAATLSQGATVLVLERGGSPYTNPEQININNFVNSLADISPSSFSQPFISRDGVLNSRARALGGGSVLNAGFYSRASSKYIVDSGWNETLAKDSYQWVEKKVAFEPPMLQWQSAVKDGLLEVGVLPYNGFTFDHLYGTKVGGTIFDKEGNRHTAADLLEYADPKRISVYLHATVQKILFKYNTEKRRQQAYGVIFKDALGVMHRAYLSTKGKSEIILSAGAIGSPQLLMLSGIGPANHLQAHGIKVVLDQPLVGQGMADNPLNVLLVPSPVPVEVSLVQTVGITKFGSFIEAASGLSLGHSWSERLQGIFEFVSNQSGQPSMFPPVADTIRSLANPILKGGVLLEKIIGPRSTGHLELINTNPNDNPSVTFNYFKDPEDLRKCVEGMRTIIDVINSKAFSKFRYHNMPVQSLIDLMLHLPVNLRPKHANAAFSLEQYCIDTVLTIWHYHGGCQSGKVVDHNYKVIGVEALRVIDGSTFHRSPGTNPQATVMMLGRYMGEKIIKKRFFHGRK* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1240 570 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Gso20g1240 570 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 3 564 - -
Gso20g1240 570 PIRSF Alcohol_oxidase 27 568 IPR012132 GO:0050660
Gso20g1240 570 Gene3D - 163 503 - -
Gso20g1240 570 SUPERFAMILY FAD/NAD(P)-binding domain 44 564 IPR036188 -
Gso20g1240 570 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 510 - -
Gso20g1240 570 Pfam GMC oxidoreductase 409 554 IPR007867 GO:0016614
Gso20g1240 570 PANTHER OSJNBA0019K04.7 PROTEIN 3 564 - -
Gso20g1240 570 Gene3D - 46 553 IPR036188 -
Gso20g1240 570 Pfam GMC oxidoreductase 46 148 IPR000172 GO:0016614|GO:0050660
Gso20g1240 570 Pfam GMC oxidoreductase 225 320 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1240 Gso-Chr20 42429634 42432648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1240 3 569 Miscellaneous Gene Families AT5G51950 59.005 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1240 - - gmx:100780453 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1240 20 42429634 42432648 Gso20g1240 20 42429634 42432648 ECH
Gso20g1240 20 42429634 42432648 Gso10g2139 10 48420005 48424253 GST