Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1221 ATGGAAGCCATTTCCAACCAAAACCATGTTCCTCTCTTCCATGCAATCCCCCCTGACCAATTCACTCTCTTGTCAAAGGTCCTTTCAAAACTCTCAATTCTTCTTTGGCCTTGTACCTTCTTAATTGAAGCATTCTTACTTGTGCAAAACTGGGACCTACTGTTCCATTTTGTGCTACCATGTTTCCTCCTTCTTTGTTTCCTGGTGAAGCACTTCCTCTCAAAGCCCTCTCCCATTTACCTTGTGGATTTCTCATGTCTTAAACCTCCAAGCCACTGCAGGGTGCCTTTTACTACATTTCTTGAAAATGCTTCCATGTTGGAGGTTTTTGACAGTGAAAGCATAGCTTTCATGGCCAAAGTCCTCCATTCCTCGGGACAAAGTGAAGAGGCATGCCTCCCCCCTTCCTTGCACTACATTCCTCCAAACACTCACCACACAGAATCCATCAAAGAGGTGCAAATGGTTCTTTTCCCCATCGTGGAAGATCTTCTAGCAAAAACCAACCTTTCACCCCTTGATATAGACATACTTATCATAAACTGCAGTGGCTTTTGCTCCTCACCTTCTCTAACCTCCATTGTTATTAACAAATACTCTATGAGAAATGACATTAAGAGCTATAATATCTCTGGCATGGGGTGCAGTGCAAGTGCCCTTTGCATTGATTTGGCTCAGAATCTTCTGAGTGTTCACAAGAACTCTAATGCCATTGTCCTCAGCACAGAGATTTTGTCAACAGGTTGGTATTCAGGCAATGAAAAGTCCAAGTTGCTGATTAATTGCCTCTTTCGGATGGGAAGTGCAGCAATCCTTCTCTCAAACAAGAAAGAAGCAAAGAAAACTGCAAAGTACAGGTTGGTCAGGACACTTAGAACCCAGAGAGCCTTTGATGACAAATCTTATTTTTCTGCCATAAGGGAAGAAGATTCTGATGGAAAACTTGGGGTGACACTGAAGAGGGACTTGCTTCAGGTGGCTGGTGAAACTCTCCGTACAAACATCTCCATTTTGGGGTCTGAAATCTTGCATCTTTCAGAGAAGTTTTCGTATGGAGTTTCTGTGATCAAGAAGAGGTTCATCAAGTCTGAGGGAATTTACGTGCCAAATTTCAAGACAGTGATACAGCACTTCTGCTTGCCATGTTCTGGGAGGCCAGTGATAAGAGAGATAGGGAAAGGGTTGAAGCTCTCAGAGAGAGACATTGAACCTGCTTTGATGACACTGCACAGGTTTGGGAACCAGTCTTCTTCCTCGCTGTGGTATGAACTAGCTTACTTGGAAGCCAAGGAAAGAGTACACAAGGGAGACAAGGTTTGGCAGCTTGGAATGGGAAGTGGACCCAAATGCAACAGTGTTGTTCTGAAGTGTATTAGGCCTATAGTTGGAGAGTACAAGAAGGGACCATGGGCTGATTGTATCAATCAGTACCCAATATTAGCCTTGGACTAG 1452 0.438 MEAISNQNHVPLFHAIPPDQFTLLSKVLSKLSILLWPCTFLIEAFLLVQNWDLLFHFVLPCFLLLCFLVKHFLSKPSPIYLVDFSCLKPPSHCRVPFTTFLENASMLEVFDSESIAFMAKVLHSSGQSEEACLPPSLHYIPPNTHHTESIKEVQMVLFPIVEDLLAKTNLSPLDIDILIINCSGFCSSPSLTSIVINKYSMRNDIKSYNISGMGCSASALCIDLAQNLLSVHKNSNAIVLSTEILSTGWYSGNEKSKLLINCLFRMGSAAILLSNKKEAKKTAKYRLVRTLRTQRAFDDKSYFSAIREEDSDGKLGVTLKRDLLQVAGETLRTNISILGSEILHLSEKFSYGVSVIKKRFIKSEGIYVPNFKTVIQHFCLPCSGRPVIREIGKGLKLSERDIEPALMTLHRFGNQSSSSLWYELAYLEAKERVHKGDKVWQLGMGSGPKCNSVVLKCIRPIVGEYKKGPWADCINQYPILALD* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1221 483 CDD CHS_like 80 455 - -
Gso20g1221 483 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 375 456 IPR013747 -
Gso20g1221 483 PANTHER 3-KETOACYL-COA SYNTHASE 21 481 - -
Gso20g1221 483 Pfam FAE1/Type III polyketide synthase-like protein 74 359 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gso20g1221 483 SUPERFAMILY Thiolase-like 264 459 IPR016039 GO:0016746
Gso20g1221 483 Gene3D - 104 457 IPR016039 GO:0016746
Gso20g1221 483 PANTHER 3-KETOACYL-COA SYNTHASE 21 481 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gso20g1221 483 SUPERFAMILY Thiolase-like 68 279 IPR016039 GO:0016746
Gso20g1221 483 PIRSF Very_long_ch_3-ktacl-CoA_syn 9 482 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1221 Gso-Chr20 42188233 42189994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1221 54 480 Miscellaneous Gene Families AT1G25450 49.299 3.30e-155 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1221 K15397 - gmx:100813265 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1221 20 42188233 42189994 Gso10g2157 10 48613793 48615618 GST