Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2157 ATGGAAGCCATTTCCAACCAAAACCATATTCCTCTCTTCCATGCAAATGAAACCCTCCCTGACCAATTCTCCCTCCTGTCAAAGGTCCTTCTTTCAAAATTCTCAAATCTTCTTTGGCCTTGTACCTTCTTACTTGTGCAAAACCGGGAACTAATGTTCCATTTTGTGCTACTATGTTTCCCCCTTGTTTGTTTCCTGGTGAAGCATTTCCTCTCAAAGCCCTCACCCATTTACCTTGTGGATTTCTCATGTCTTAAACCTCCAAGCCACTGCAGGGTGCCTTTTGCAACATTTCTTGAAAATGCTTCCATGTTGGAGGTTTTTGACAGTGAAAGCATAGCTTTCATGGCCAAAGTCCTCCATTCCTCGGGACAAAGTGAAGAGACATGCCTCCCCCCTTCCTTGCACTACATTCCTCCAAACACTGACCACACAGAATCCATCAAAGAGGTGCAAATGGTACTTTTCCCCATCATGGACGATCTTCTAGCAAAAACCAACCTTTCACCCCTTGACATAGACATACTTGTCGTAAACTGTAGTGGCTTCTGCTCCTCACCTTCTTTAACCTCCACTGTCATTAACAAATACTCTATGAGAAGTGACATTAAGAGCTATAATATCTCTGGCATGGGGTGCAGTGCAAGTGCCCTTTGCATTGATTTGGCTCAGAATCTTCTGAGTGTTCACAATAACTCTAATGCCGTTGTTCTCAGCACAGAGATTTTGTCAACAGGTTGGTATTCAGGCAATGAAAAGTCCAAGCTTCTGATAAATTGCCTCTTTAGGATGGGAAGTGCAGCAATCCTTCTCTCAAACAAGAAAGTAGCAAAGAAAACTGCAAAGTACAGGTTGGTTAGGACACTTAGAACCCAGAGAGCCTTTGATGACAAAGCTTATTCTTCTGCCATTAGGGAAGAAGATTCTGATGGAAAACTTGGGGTGACACTGAAGAGGGACTTGCTTCAGGTGGCTGGAGAAACACTCCGGGAAAACATCTCCATTTTGGGGTCGGAAATCTTGCCTCTTTCAGAGAAGTTTTGGTATGGAGTTTCTGTTATCAAGAAGAGGTTCATAAAGTCTGAGGGAATTTACGTGCCAAATTTCAAGACAGTGATACAGCACTTCTGCTTGCCATGTTCTGGGAGGCCAGTGATAAAAGAAATAGGGAAAGGGTTGAAGCTCTCAGAGAGAGACATTGAACCTGCTTTGATGACACTTCACAGGTTTGGAAACCAGTCTTCTTCCTCACTGTGGTATGAACTAGCTCACTTGGAAGCCAAGGAAAGAGTGCACAAGGGAGACAAGGTTTGGCAGCTTGGAATGGGAAGTGGACCGAAATGTAACAGTGTTGTTCTGAAGTGTATTAGGCCTATAGTTGGAGAGTACAAGAAGGGACCATGGGCTGATTGCATCAATCAGTACCCAATATTAGCCTTGGATTAG 1446 0.4378 MEAISNQNHIPLFHANETLPDQFSLLSKVLLSKFSNLLWPCTFLLVQNRELMFHFVLLCFPLVCFLVKHFLSKPSPIYLVDFSCLKPPSHCRVPFATFLENASMLEVFDSESIAFMAKVLHSSGQSEETCLPPSLHYIPPNTDHTESIKEVQMVLFPIMDDLLAKTNLSPLDIDILVVNCSGFCSSPSLTSTVINKYSMRSDIKSYNISGMGCSASALCIDLAQNLLSVHNNSNAVVLSTEILSTGWYSGNEKSKLLINCLFRMGSAAILLSNKKVAKKTAKYRLVRTLRTQRAFDDKAYSSAIREEDSDGKLGVTLKRDLLQVAGETLRENISILGSEILPLSEKFWYGVSVIKKRFIKSEGIYVPNFKTVIQHFCLPCSGRPVIKEIGKGLKLSERDIEPALMTLHRFGNQSSSSLWYELAHLEAKERVHKGDKVWQLGMGSGPKCNSVVLKCIRPIVGEYKKGPWADCINQYPILALD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2157 481 PANTHER 3-KETOACYL-COA SYNTHASE 30 479 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gso10g2157 481 PANTHER 3-KETOACYL-COA SYNTHASE 30 479 - -
Gso10g2157 481 SUPERFAMILY Thiolase-like 286 455 IPR016039 GO:0016746
Gso10g2157 481 CDD CHS_like 78 453 - -
Gso10g2157 481 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 373 454 IPR013747 -
Gso10g2157 481 SUPERFAMILY Thiolase-like 66 276 IPR016039 GO:0016746
Gso10g2157 481 PIRSF Very_long_ch_3-ktacl-CoA_syn 10 480 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gso10g2157 481 Pfam FAE1/Type III polyketide synthase-like protein 72 357 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gso10g2157 481 Gene3D - 102 455 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2157 Gso-Chr10 48613793 48615618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2157 52 478 Miscellaneous Gene Families AT1G25450 48.832 1.16e-155 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2157 K15397 - gmx:100818350 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2157 10 48613793 48615618 Gso10g2157 10 48613793 48615618 ECH
Gso20g1221 20 42188233 42189994 Gso10g2157 10 48613793 48615618 GST