Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1496 ATGGCTGCTTCAAGGTTAACCTCATGCGTGGCGGTAACTTCCGCTGCGGTGGTTTCCATGTCCACCTTCTCCGATCGTGCCTACGCCGATTCTTACTTTCGACTCCCGTTCTTCTCTTCTAAATCTTCCAGTGAGCCCTCGCCGCCGAATCAGCCCTCTGACTCCAATTCCGAGCCTCCGCCGCCCGATGAACCTAACAAATCGGGTTTCGACCCGGAATCGTTAGAAAGAGGAGCCAAAGCTCTCCGCGAAATCAATAGTTCTCCCTACTCCAAGCAGCTGTTTGATTTAATGCGAAAACAGGAGGAAACTCGCCTCGCTGAATTAGATGCTGAGAAAGTGCATTACGAACTTATTCAATCTCAAGGAGATATTGAAAGGCAGCGTAAAATGGCTGAAGAACAACGCAATCTTATACAGGACCAAGCCCAGAGACAGGCCCAGGTGTTGCGATATGAAGATGAATTGGCAAGGAAAAGATTGCAGACAGATCATGAAGCCCAAAGGCAACATAATGTTGAATTGGTCAAGATGCAAGAGCAGTCTTCTTTCAGAAAGGAGCAGGCAAGACAGGCTACTGAAGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGGGAGAGAGCTGAAATAGAAAGAGAAACTATTAGAGTTAAGGCAATGGCAGAGGCTGAAGGCCGAGCCCATGAAGCAAAATTGACTGAGGATCATAACAGGAGAATGCTTATAGAACGAATGCAAGGTGAAAGAGATAAATGGCTTGCTGCAATTAACACAACTTTTAGTCATATTGAAGGGGGCCTAAGGGCCTTATTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACTGCACTAGCTGCAGGAATATATATGACTAGAGAAGGTAGTAAAGTCACTTGGGGCTATATTAATCGGATTTTGGGGCAGCCATCTCTGATCCGGGAATCATCTATGGCAAAGTTTCCTGGGTCAAAGATCATTTCTCAAGCCAAAAATAAAGTTCTACATGATAGTACTTTGGCTGGGGCAGAAAAGCCTATTGGGAGTAAAAATGGTCTTGGAAATGTAATCCTTCATCCATCGTTGCAGAGAAGAATAGAGCATCTTGCACGTGCAACATCAAATACCAAATCCCATCAGGCACCATTTCGTAACATGCTTTTTTACGGGTCTCCTGGCACTGGTAAAACGATGGTTGCAAGAGAAATAGCTAGAAGATCGGGTTTGGATTATGCCATGATGACTGGAGGAGATGTTGCACCTCTGGGCGCACAGGCTGTTACCAAAATTCATGATATATTTGATTGGTCCAAGAAATCAAGAAAAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCTCCCACATGAGTGAAGCTCAACGAAGTGCTCTAAATGCATTGCTCTTCAGAACTGGTGATCAGTCTAGAGACATAGTACTTGTCCTTGCCACAAACAGGCCAGGTGATCTTGATAGTGCAGTTACTGATCGCATTGATGAAGTGATTGAATTCCCGCTACCAGGAGAGGAAGAGCGTCTAAAGTTGTTGAAGCTCTATTTGAACAAGTATTTATGTGATGACAATAATGGCTCCAAGGGGGGTTTCTTTCTGAAGAAGCAGCCTCAGAAGATTTCCATAAAAGATTTATCTGAAGATGTTTTCAGAGAGGCTGCCACGAAAACAGAGGGATTTTCTGGTCGTGAGATCGCCAAACTCATGGCCAGCGTCCAAGCTGCTGTCTATGGGCGCCCAGACTGCATCTTGGATTCCCAGTTGTTTAGAGAAAGTATAGATTACAAGGTCGTGGAACATCATCAACGATTAAAACTAGCAGCTGATGGCCAAATATAA 1881 0.4482 MAASRLTSCVAVTSAAVVSMSTFSDRAYADSYFRLPFFSSKSSSEPSPPNQPSDSNSEPPPPDEPNKSGFDPESLERGAKALREINSSPYSKQLFDLMRKQEETRLAELDAEKVHYELIQSQGDIERQRKMAEEQRNLIQDQAQRQAQVLRYEDELARKRLQTDHEAQRQHNVELVKMQEQSSFRKEQARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERMQGERDKWLAAINTTFSHIEGGLRALLTDRDKLLMTVGGATALAAGIYMTREGSKVTWGYINRILGQPSLIRESSMAKFPGSKIISQAKNKVLHDSTLAGAEKPIGSKNGLGNVILHPSLQRRIEHLARATSNTKSHQAPFRNMLFYGSPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHDIFDWSKKSRKGLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNNGSKGGFFLKKQPQKISIKDLSEDVFREAATKTEGFSGREIAKLMASVQAAVYGRPDCILDSQLFRESIDYKVVEHHQRLKLAADGQI* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1496 626 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 625 - -
Gso1g1496 626 CDD AAA 383 516 - -
Gso1g1496 626 Coils Coil 190 217 - -
Gso1g1496 626 MobiDBLite consensus disorder prediction 179 210 - -
Gso1g1496 626 MobiDBLite consensus disorder prediction 39 73 - -
Gso1g1496 626 Pfam ATPase family associated with various cellular activities (AAA) 389 516 IPR003959 GO:0005524|GO:0016887
Gso1g1496 626 MobiDBLite consensus disorder prediction 52 67 - -
Gso1g1496 626 PANTHER PUTATIVE ATP-ASE 1 625 IPR039188 GO:0005739|GO:0007005
Gso1g1496 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 611 IPR027417 -
Gso1g1496 626 ProSitePatterns AAA-protein family signature. 488 507 IPR003960 GO:0005524|GO:0016887
Gso1g1496 626 Pfam ATPase family AAA domain-containing protein 3, N-terminal 54 317 IPR021911 -
Gso1g1496 626 Gene3D - 333 536 IPR027417 -
Gso1g1496 626 SMART AAA_5 385 518 IPR003593 -
Gso1g1496 626 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1496 Gso-Chr1 51620863 51626733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1496 365 592 Miscellaneous Gene Families AT5G53170 28.870 3.21e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1496 K17681 - gmx:100776095 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1496 1 51620863 51626733 Gso11g0585 11 5224749 5230903 GST