Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0585 ATGGCTGCTTCAAAGTTAACCTCATGCGTGGCGGTAACTTCCGCCGCGGTGGTTTCCATGTCCGCCTTCTCCGATCGTGCCTACGCCGATTCTTACTTCCGACTCCCTTTCTTCTCCTCTAAACCTTCCAATGAACCCTCGCCGCCGAACCAGACCTCCGACTCCAAGTCCGAGCCTCCGCCGCCCGATGAACCTAACAAATCGGGTGGCTTCGACCCGGAATCCTTAGAAAGAGGAGCCAAAGCACTCCGTGAAATCAATAGTTCTCCCTACTCCAAGCAGCTGTTCGATTTAATGCGAAAACAGGAGGAAACTCGCCTCGCTGAATTAGATGCTGAGAAAGTTCATTACGAACTTATTCAATCTCAAGGAGATATTGAAAGGCAGCGTAAAATGGCTGAAGAACAGCGCAATCTAATACAAGACCAAGCCCAGAGACAGGCCCAGGTGTTGCGATATGAAGATGAGTTGGCAAGGAAAAGAATGCAGACAGATCATGAAGCCCAAAGGCAACATAATGTTGAATTGGTCAAGATGCAAGAGCAGTCTTCTTTCAGAAAGGAGCAGGCAAGACAGGCTACTGAAGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAAATTGAAAGAGAAACTATTAGAGTTAAGGCAATGGCGGAGGCTGAAGGCCGAGCCCATGAAGCAAAATTGACCGAGGATCATAACAGGAGAATGCTTATAGAACGAATGCAAGGTGAAAGAGATAAATGGCTTGCTGCAATTAACACAACCTTTAGTCATATTGAAGGTGGTCTAAGGGCCTTATTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACTGCACTAGCTGCAGGAATATATACGACTAGAGAAGGTAGTAAAGTCACCTGGGGCTATATTAATCGGATTTTGGGGCAGCCATCGCTGATCCGGGAGTCATCTATGGCAAAGTTTCCTGGGTCAGAGATCATTTCTCAAGCCAAAAACAAAGTGCTGTGTAATAGTACTTTGGCTGGGGCAGAAAAGCCTATTGGGAGTAAAAATGGTCTTGGAAATGTAATCCTTCATCCATCATTGCAGAGAAGAATAGAGCATCTTGCACGTGCAACATCAAATACCAAATCCCATCAGGCACCATTTCGTAACATGCTTTTTTATGGGCCTCCTGGCACTGGTAAAACGATGGTTGCAAAGGAATTAGCTAGAAGATCGGGTTTGCATTATGCCATGATGACTGGAGGAGATGTTGCACCTCTTGGCGCACAGGCTGTTACCAAAATTCATGATATATTTGATTGGGCCAAGAAATCAAGAAAAGGCCTATTGCTTTTTATTGATGAGGCGGATGCTTTCCTTTGCGAGCGTAACAGCTCCCACATGAGTGAAGCTCAACGAAGTGCTCTAAATGCATTGCTCTTCAGAACTGGTGATCAGTCTAGAGACATAGTACTTGTCCTGGCGACAAACAGGCCTGGTGATCTTGATAGTGCAGTTACTGATCGCATTGATGAAGTAATTGAATTCCCACTTCCAGGAGAGGAAGAGCGTCTAAAGTTGTTGAAGCTCTATTTGAACAAATATTTATGTGATGACAATAATGGCTCCAAGGGGGGTTTCTTCCTGAAGAAGCAACCTCAGAAGATTACCATAAAAGATTTATCTGAAGATGTTTTCAGAGAGGCTGCCAAGAAAACAGAGGGATTTTCTGGCCGCGAGATCGCCAAACTCATGGCCAGCGTCCAAGCTGCTGTTTATGGGCGCCCAGACTGCATCTTGGATGCCCAGTTGTTTAGAGAAATTGTAGATTACAAGGTCGTGGAACATCATCAACGATTAAAACTAGCAGCTGAAGGTGGCCAGCCTTGCCAAATATAA 1896 0.4552 MAASKLTSCVAVTSAAVVSMSAFSDRAYADSYFRLPFFSSKPSNEPSPPNQTSDSKSEPPPPDEPNKSGGFDPESLERGAKALREINSSPYSKQLFDLMRKQEETRLAELDAEKVHYELIQSQGDIERQRKMAEEQRNLIQDQAQRQAQVLRYEDELARKRMQTDHEAQRQHNVELVKMQEQSSFRKEQARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERMQGERDKWLAAINTTFSHIEGGLRALLTDRDKLLMTVGGATALAAGIYTTREGSKVTWGYINRILGQPSLIRESSMAKFPGSEIISQAKNKVLCNSTLAGAEKPIGSKNGLGNVILHPSLQRRIEHLARATSNTKSHQAPFRNMLFYGPPGTGKTMVAKELARRSGLHYAMMTGGDVAPLGAQAVTKIHDIFDWAKKSRKGLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNNGSKGGFFLKKQPQKITIKDLSEDVFREAAKKTEGFSGREIAKLMASVQAAVYGRPDCILDAQLFREIVDYKVVEHHQRLKLAAEGGQPCQI* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0585 631 Gene3D - 347 535 IPR027417 -
Gso11g0585 631 ProSitePatterns AAA-protein family signature. 489 508 IPR003960 GO:0005524|GO:0016887
Gso11g0585 631 Pfam ATPase family AAA domain-containing protein 3, N-terminal 52 318 IPR021911 -
Gso11g0585 631 Coils Coil 126 146 - -
Gso11g0585 631 MobiDBLite consensus disorder prediction 180 211 - -
Gso11g0585 631 MobiDBLite consensus disorder prediction 53 67 - -
Gso11g0585 631 SMART AAA_5 386 519 IPR003593 -
Gso11g0585 631 CDD AAA 384 517 - -
Gso11g0585 631 Coils Coil 191 218 - -
Gso11g0585 631 PANTHER PUTATIVE ATP-ASE 1 628 IPR039188 GO:0005739|GO:0007005
Gso11g0585 631 MobiDBLite consensus disorder prediction 38 77 - -
Gso11g0585 631 MobiDBLite consensus disorder prediction 38 52 - -
Gso11g0585 631 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 628 - -
Gso11g0585 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 613 IPR027417 -
Gso11g0585 631 Pfam ATPase family associated with various cellular activities (AAA) 390 517 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0585 Gso-Chr11 5224749 5230903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0585 366 593 Miscellaneous Gene Families AT5G53170 29.289 2.29e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0585 K17681 - gmx:100777755 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0585 11 5224749 5230903 Gso11g0585 11 5224749 5230903 ECH
Gso1g1496 1 51620863 51626733 Gso11g0585 11 5224749 5230903 GST