Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1305 ATGGCGACCGAATCCGGCGCGAACGGTCCTTCGTCCAGTTCCGCGGAATCTTTCATTGGTTGCTTCATAAGCTTGATTTCCAAGTGCGAGATTCGCTACGAAGGCGTTCTCTATTTCCTTAACATTCAAGATTCCACCATCGGCTTGAAGAACGTTAGATCCTATGGAACAGAGGGGAGAAAAAAAGATGGTCCACAAGTTCCTTCAAGTGATAAGGTTTATGAATACATTCTTTTCCGAGGAAATGATATTAAGAATTTGCAGATCAAATCACCCACCCCATCTTCCAAATCAGAAGAGCAGGTTTTTAGTGATCCAGCTGTTATTCAGTCAGAATATTCTGGGTTGCGAAGTTCTCCAGTGGGTGAGCTGCCAAGTTCTCCAGTGGCTGGGTTGCTAAGTTCTCCAGTGGCCTCAGTTGGTGGCAGAAGTTTGACAGAATCAATTCAAAGGCAAGATAGCCCTGCAATATCCAGTAAAGCCTTTCCTTCTGGGTTGCCTTCTCATCAGTCTGTAACTCAGCTGGGACCTTCAAATTTATCTGATGCTACTCAAGTTGCTAGTCATCCATCTTTTTCTGCAGCAATGTATTGGCAAGGTCCCAGTGGGATATCTAGCAGTAGTTATCATTCTCTGCTACAGTCTAGTTCTCTTCACCCCACATCACTGGCAGCATCCTTAGTTGTGCAGAATCAGATGCAAAATGCAGAAACTCAGGTACCTATAAACGGGGGATGGACAGGTTTATCAGAGTATGGTCTACCTGTATCTTCTGCCATGACTTCTCTTGTAAATCAGACTCATTCACCTTCTCTTACCTCTTTAAAAAATTCTGATTCTCTTGATATTCCATCCCTTTTGTCTACTAAGACACCTGTGTCATATTCTCCATCCATGACTTTTGATGGATCAAACATGCCTCAGTTTTCTTCAACACTCCAAGACATAAATTCTATTCAAGCTCAAATATCTGGAAACATTTGTCCTGACCCAAGGCCAATTCATCCTCAACATTCTGTCCATCGTTCTGCTCCTTCATATGTAGATTCTACTTCAGGTTCCTTGCCAACAGCAACTTCTTTGTTAACCCCGGATCAATTTGCCTATCCTAGAGAACAGTTATTGTCTTTATCACATTTAAACCCTACTCAGAAGGACATGGGTTCTCTGACTCTAACATCCTCTGGTTCCTCTGCATTAATTCCTTCTCCAGCATCTCAGGCACCATTGCTTCCACTACCAACTTCAGTGCAAAAGCCTCCATACACAGCTCCACAATACACTGAGGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAAAAAAGATGAAGTATGGGGTTCTCTTGGAAAGACAACTACAAAAATAGAGGGAGTGGCGAATAATGCTTCTCTCAGTTTGGGTGACAGAGAATGTCATGGGGTGATACCAAACCCTAAGACTGCATACAAGAAAGATGACTTTTTTGATACAATTTCTTGCAACTCTTTGACTCATGGATCAAGGAATGGACAAAATCGTTTCTCTGAGAGAATGAAACAGGATACTGAGACATTTGGCAATTTCCAGCAGAGGCCTAATTTTACTAATGGTGGTTATGGTGCTGGACGGGGTGCTAATTTCAGGGGCTCAAATAATTGGGGAAGGGGTTATGGCTACAATGGGAGAGGGCGTGGTCCAAACTTTCCTTTCTAG 1695 0.4283 MATESGANGPSSSSAESFIGCFISLISKCEIRYEGVLYFLNIQDSTIGLKNVRSYGTEGRKKDGPQVPSSDKVYEYILFRGNDIKNLQIKSPTPSSKSEEQVFSDPAVIQSEYSGLRSSPVGELPSSPVAGLLSSPVASVGGRSLTESIQRQDSPAISSKAFPSGLPSHQSVTQLGPSNLSDATQVASHPSFSAAMYWQGPSGISSSSYHSLLQSSSLHPTSLAASLVVQNQMQNAETQVPINGGWTGLSEYGLPVSSAMTSLVNQTHSPSLTSLKNSDSLDIPSLLSTKTPVSYSPSMTFDGSNMPQFSSTLQDINSIQAQISGNICPDPRPIHPQHSVHRSAPSYVDSTSGSLPTATSLLTPDQFAYPREQLLSLSHLNPTQKDMGSLTLTSSGSSALIPSPASQAPLLPLPTSVQKPPYTAPQYTEEFDFEAMNEKFKKDEVWGSLGKTTTKIEGVANNASLSLGDRECHGVIPNPKTAYKKDDFFDTISCNSLTHGSRNGQNRFSERMKQDTETFGNFQQRPNFTNGGYGAGRGANFRGSNNWGRGYGYNGRGRGPNFPF* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1305 564 Pfam FDF domain 427 521 IPR019050 -
Gso1g1305 564 ProSiteProfiles TFG box profile. 503 523 IPR025768 -
Gso1g1305 564 SMART FDF_2 425 523 IPR019050 -
Gso1g1305 564 Gene3D - 10 93 - -
Gso1g1305 564 ProSiteProfiles DFDF domain profile. 419 455 IPR025762 -
Gso1g1305 564 PANTHER SCD6 PROTEIN-RELATED 13 555 - -
Gso1g1305 564 SUPERFAMILY Sm-like ribonucleoproteins 17 92 IPR010920 -
Gso1g1305 564 CDD LSm14_N 15 89 IPR025609 -
Gso1g1305 564 MobiDBLite consensus disorder prediction 144 171 - -
Gso1g1305 564 ProSiteProfiles FFD box profile. 481 496 IPR025761 -
Gso1g1305 564 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 13 555 - -
Gso1g1305 564 Pfam Scd6-like Sm domain 18 91 IPR025609 -
Gso1g1305 564 SMART LSM14_2 12 113 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1305 Gso-Chr1 49542379 49549038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1305 K18749 - gmx:102669894 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1305 1 49542379 49549038 Gso1g1305 1 49542379 49549038 ECH
Gso1g1305 1 49542379 49549038 Gso9g1803 9 42509111 42515632 GST