Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1142 ATGGATTATTCAGGCTACAACTTCCAGCAGCAACCACAGCAACATTCCTATGGTTACGACCCTTCTCAGATCCCAATCCAACCCTACGATCAATCCTATGCTGCGTACCAACAATACTACGCTTACAATCCCCAATACGCGTATTTCCCCAACGCACACCAAACCCAGTTTCAGTTCCAACCCGAACCTGCTCCGCTTCACCCTCCCGGCGTCAACCCCTCCGCTGCCGAACCCGCCCCGACTGGGCCATCTCAATACAGAGGTAGGGGTGGCAGGGGTGGTAGACCATTTAGAGGGGCCGGTCGTGGTCGAGGCCATGGTAGGGGACATGGAGTGGGGGGTGTTAGACACATTCCATTTCATTCTTCTGGACCTGTTGTTTCTAATGTGCCAGCTCGAGTGCAACCACCAGTACCACCACGTAAAGTGTGTTGTGAAATTTGTAAGGTTGAGTGCAATTCTCCAGAAATCTTGGAGCAACACAAGGTTGGGAAGAAACATCAGAAGAATATGAGGGTGCATGAAGAATTGCAGAGGCGCAACGCTATAAATGAACAACAGAGTGGGGAAATTCCTACCTCTCAATTGAATTTAACAGACCAACCTAAGGAAGTTCAGGAGTCCGAGAAAAATGGACACCCCACAGAAAATATGGGCTCTGGGGTTATAATCAATAATCATGAGGAGGAAATACAGCTGCAGAATAACGTAGGAAACATGTCCGAGGTTCCAGCTGAGGTGCCCGAGGGGAAAACCGTGGATAACTCTGCTGCAAGAGGCCGAGGATTGAAGCGGAAGAAGAAAGGAGGAAAAGGAGGTAAATACATGAGAACTAATGATGGTTCAAAGCCAGTGGAGCCTGCACAAACTATGTCTTTTAGATGTGAGCTGTGTGATGTTAAATGTGAGTCACAAGTTGTTTACCAGAGTCATATGACTGGGAAAAAACACTTATCAAAACTAAGGCGTGCTTCATCTGGAGTAGGCCAGCAGCAAGCCCTGTCTGGAGCACTCTCAGGGCTTCAAGCAGTTTACCCACCTGACATCAACGCTCTGTCTAATGCAATTAATGCTCAAGTTCAACAAGGTGATAATGATCCACAGGTACTTTTGGCTCAGCTCCTGATGACCGTACTATCTCAAGCACAAGTTCCAGCAACAGCACCAGTGACAGGTGCCATAGCTTCTCAGATACCAGCACCAACATCTATGGCTGGACCAAGTTATGAACCCCAGTTGTTGCAGACAAATTCTTCTGGGGAAACAAAAACTGAGCTGCCAGGTTCAAGTGTCAGCACCCAAATTGAAGGTGGAGGTTCTGAAACCAAACAACAGGTGTGA 1341 0.4795 MDYSGYNFQQQPQQHSYGYDPSQIPIQPYDQSYAAYQQYYAYNPQYAYFPNAHQTQFQFQPEPAPLHPPGVNPSAAEPAPTGPSQYRGRGGRGGRPFRGAGRGRGHGRGHGVGGVRHIPFHSSGPVVSNVPARVQPPVPPRKVCCEICKVECNSPEILEQHKVGKKHQKNMRVHEELQRRNAINEQQSGEIPTSQLNLTDQPKEVQESEKNGHPTENMGSGVIINNHEEEIQLQNNVGNMSEVPAEVPEGKTVDNSAARGRGLKRKKKGGKGGKYMRTNDGSKPVEPAQTMSFRCELCDVKCESQVVYQSHMTGKKHLSKLRRASSGVGQQQALSGALSGLQAVYPPDINALSNAINAQVQQGDNDPQVLLAQLLMTVLSQAQVPATAPVTGAIASQIPAPTSMAGPSYEPQLLQTNSSGETKTELPGSSVSTQIEGGGSETKQQV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1142 446 Gene3D Classic Zinc Finger 130 176 - -
Gso1g1142 446 Gene3D Classic Zinc Finger 274 324 - -
Gso1g1142 446 MobiDBLite consensus disorder prediction 260 285 - -
Gso1g1142 446 PANTHER OS06G0651300 PROTEIN-RELATED 76 422 - -
Gso1g1142 446 PANTHER OS06G0651300 PROTEIN-RELATED 1 73 - -
Gso1g1142 446 SMART c2h2final6 143 167 IPR013087 -
Gso1g1142 446 SMART c2h2final6 293 317 IPR013087 -
Gso1g1142 446 SMART ZnF_U1_5 140 174 IPR003604 GO:0003676|GO:0008270
Gso1g1142 446 SMART ZnF_U1_5 290 324 IPR003604 GO:0003676|GO:0008270
Gso1g1142 446 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 1 73 - -
Gso1g1142 446 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 76 422 - -
Gso1g1142 446 SUPERFAMILY beta-beta-alpha zinc fingers 284 324 IPR036236 -
Gso1g1142 446 MobiDBLite consensus disorder prediction 182 217 - -
Gso1g1142 446 SUPERFAMILY beta-beta-alpha zinc fingers 137 175 IPR036236 -
Gso1g1142 446 MobiDBLite consensus disorder prediction 182 202 - -
Gso1g1142 446 MobiDBLite consensus disorder prediction 405 446 - -
Gso1g1142 446 MobiDBLite consensus disorder prediction 1 21 - -
Gso1g1142 446 Pfam Zinc-finger of C2H2 type 145 167 - -
Gso1g1142 446 Pfam Zinc-finger of C2H2 type 293 317 - -
Gso1g1142 446 MobiDBLite consensus disorder prediction 59 133 - -
Gso1g1142 446 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1142 Gso-Chr1 46087242 46095890 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1142 - - gmx:100794880 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1142 1 46087242 46095890 Gso3g0271 3 3827401 3834570 GST