Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1942 ATGACTTCTTTGAGCCGAGAATTAGTATTTCTGATACTCCAATTTTTGGAGGAGGAGAAGCTGAAGGAGTCGGTGCACAAGCTCGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAACAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTAGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACTCTTAGTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTACGGTGACACCAAAAATGCTAGAGGAATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGACAAACTTATCTTCCCTACCCTTAGGTCATCAAGATTGCGGACATTGATCAATCAAAGTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCTGTTGCTGCGGTTGCAAAGCCTGCTGCTTATACTTCAATTGGTGCTCATGGTCCCTTTCTGCCTGCCACAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCTGCCATACCTGTCCCACAGAATCCAGTGTCTATCTTGAAGTGTCCAAGAACACCTCTGACAACTGCAGGCATGGCGGATTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTGTAGAGGAGGTTTCATGTCCTGCTGCTCGACCAGCCTCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAAACCTTACTTCTCGTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCACCTATTTCTGTCAGCCGTGTCACATGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGTTGGCTCAGCGTATAGAGGTTGATGCCCATATTGGTGGAGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTCTGGGATTTAACTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAAGAGAGCATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGACTGTTTTCTTGCGGAACTAGTAAAGATGGAGAATCATTTCTTGTTGAATGGAATGAAAGTGAAAGAGCTATTAAGAGAACATACAATGGGTTCAGAAAGAAATCCGCTGGTGTCGTGCAGTTTGACACAACCCAAAATTGCTTTTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGACATGGACAATATTAATCTTTTGACAAGCACTGACGCAGAGGGTGGACTACAGGCCCTTCCGCACTTGAGATTCAACAAGGAAGGAAATGTGCTTGCTGTTACTACTGCAGACAATGGATTCAAAATTCTTGCTAATGCCAATGGTCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCACCAATTGAATCTGCTGCAGTCAAGGCATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCAGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGTCGAAATGTGGAGAAACCTAGAACTGTGGAAGATGGAATAGATAAAGCTAAACCATGGCAGCTGTCTGAAATTGTGGATGCTGTCCAATGTCGGTTAGTTACAACGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTCGACTTTTATATACAAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGTTGTGAACAAAATCCCAATGGGAAGGCAACTGCTAGTGTTGTTCCACAGCATTGGCAGCCCAACAGTGGTCTTCTTATGACTAATGATGTCACGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAACGACTCATATGTTATGTCTGCATGTGGCGGAAAGATTTCTTTGTTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCCCCTGCCTCTACCTTTCTGGCTTTCCACCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACAATTCACATATATAATGTTAGAGTGGATGAGGTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAGTTCCCATACAACTACCCGCAGGAAAGGCTCCTGTTGGTGACACTCGTGTGCAGTTCCATTTAGACCAAATCCGGTTACTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGCATTAGGCAGTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACATTTTCTGATGGCAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTAAGATGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGGAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAACCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTAGTGAATCAGAAGGTAAGTGGGGAACCAGTCCACCTATGGATAATGGAATATTGAACGGTAGGGCAGCATCATCATCTACAACAAGCAACCACACACCCGACCTGGCAAAAAGATAA 3393 0.433 MTSLSRELVFLILQFLEEEKLKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKNARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFLPATATANANALAGWMANASASSSVQAAVVTASAIPVPQNPVSILKCPRTPLTTAGMADYQNADHEQLMKRLRPAPSVEEVSCPAARPASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGEITLWELGLRDRLVSKPFKIWDISACSLPFQAAMVKDAPISVSRVTWSLDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRKLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESERAIKRTYNGFRKKSAGVVQFDTTQNCFLAAGEDGQIKFWDMDNINLLTSTDAEGGLQALPHLRFNKEGNVLAVTTADNGFKILANANGLRSLRTVETPGFEALRSPIESAAVKASGSSAVNVSPVNCKVERSSPVRPSPILNGVDPMGRNVEKPRTVEDGIDKAKPWQLSEIVDAVQCRLVTTPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWARCEQNPNGKATASVVPQHWQPNSGLLMTNDVTGVNLDEAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPAGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFSDGNTGVFDADSLRLRCRIALSTYFSPAAALSGNQSVYPVVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASSSTTSNHTPDLAKR* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1942 1130 SMART Lish 4 36 IPR006594 GO:0005515
Gso19g1942 1130 MobiDBLite consensus disorder prediction 1111 1130 - -
Gso19g1942 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 483 IPR001680 GO:0005515
Gso19g1942 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Gso19g1942 1130 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Gso19g1942 1130 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Gso19g1942 1130 Gene3D - 563 691 IPR015943 GO:0005515
Gso19g1942 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Gso19g1942 1130 PANTHER PROTEIN, PUTATIVE-RELATED 1 1129 - -
Gso19g1942 1130 Pfam LisH-like dimerisation domain 5 33 - -
Gso19g1942 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Gso19g1942 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 453 948 IPR011047 -
Gso19g1942 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Gso19g1942 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Gso19g1942 1130 MobiDBLite consensus disorder prediction 1093 1130 - -
Gso19g1942 1130 Gene3D - 324 562 IPR015943 GO:0005515
Gso19g1942 1130 SMART ctlh 34 92 IPR006595 -
Gso19g1942 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 375 IPR001680 GO:0005515
Gso19g1942 1130 MobiDBLite consensus disorder prediction 705 725 - -
Gso19g1942 1130 SUPERFAMILY WD40 repeat-like 329 528 IPR036322 GO:0005515
Gso19g1942 1130 Gene3D - 829 1102 IPR015943 GO:0005515
Gso19g1942 1130 SUPERFAMILY WD40 repeat-like 967 1097 IPR036322 GO:0005515
Gso19g1942 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Gso19g1942 1130 SMART WD40_4 861 901 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 439 482 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 822 858 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 335 374 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 484 525 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 999 1035 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 528 571 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 574 614 IPR001680 GO:0005515
Gso19g1942 1130 SMART WD40_4 904 943 IPR001680 GO:0005515
Gso19g1942 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1129 IPR027728 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1942 Gso-Chr19 48111321 48120756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1942 447 656 Miscellaneous Gene Families AT5G08390 25.234 3.75e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1942 - - gmx:100808421 2234.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1942 19 48111321 48120756 Gso19g1942 19 48111321 48120756 ECH
Gso19g1942 19 48111321 48120756 Gso3g1982 3 45318139 45327267 GST
Gso19g1942 19 48111321 48120756 Gso10g1372 10 40132155 40140771 PCT
Gso10g1372 10 40132155 40140771 Gso19g1942 19 48111321 48120756 PCT