Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1372 ATGACTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTCCAGTTTCTGGAGGAAGAGAAATTCAAAGAATCTGTACACAAGCTTGAGAAAGAATCTGGGTTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGCGAGTGGGAAGAGGTTGAGAAGTACTTATCAGGATTTACCAAAGTTGATGATAATAGATACTCAATGAAAATATTTTTTGAAATCAGGAAACAGAAATATCTGGAAGCACTTGATCAGCAAGACAAGGCAAAGGCTGTGGAGATATTAGTGGGTGATTTAAAGATGTTTTCCACCTTCAATGAGGAGCTGTACAAAGAAATAACCCAGTTATTAACTCTTACTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGCTGATAGAACTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCTACCCTTAAGTCATCAAGACTGCGAACTTTGATCAATCAAAGTCTAAACTGGCAGCATCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATTAAGACTTTATTCACAGATCACACATGTGCACCTCCTAATGGTCCTCTGGCGCCCACACCCATCAATCTTCCAATTGCTGCAGTTGCAAAGCCTGCTACTTATACTCCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCTGCAACTGCCAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTAGTCACAGCATCAACTATACCTGTCCCACAGAATCAAGTGCCTATCTTGAAACGTCCTAGAACACCTCCTGCAAATCCTGGCATGGTTGATTATCAGAATGCTGATCATGACCAGCTAATGAAAAGGCTTCGTCCTGGTCATTCTGTAGAGGAGGTTTCTTATCCCTTGGCTCGACAAGCCTCTTGGTCTCTTGATGATCTACCAAGAACTGTGACTATGACATTGCATCAAGGATCCTCTGTGACGAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATTACCCTCTGGGAACTCAGTTTACGAGAAAAGTTGGTCTCAAAGCCATTCAAGATATGGGATGTGTCTGCATGCTCATTACCATTTCAGGCTGCTGCAGTCAAGGATGCACCTATTTCGGTCAGTCGGGTCACATGGAGCCCTGATGGAAGTTTTGTGGGTATTGCTTTTACTAAACATTTGATTCACTTGTATGCTTGCACTGGATCAAATGAGCTAACCCAGCGTATAGAGGTTGATGCTCATGTTGGGGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAGCTGTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTATGGGATTTAAATGGACGAAAACTATTCTCCTTTGAGGGGCACGAAGCACCTGTGTATTCCATTTGTCCCCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGCTATACGATAACATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGATTCAGAAAAAAATCTACTGGAGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGATGGCCAAGTTAAGTTTTGGGACATGGACAACATTAATCTTCTGATAAGCACTGAGGCCGATGGAGGATTACAGAGCCTTCCACGCTTGAGATTCAACAAGGAAGGAAATATTCTTGCTGTTACTACCATGGACAATGGTTTCAAGATACTTGCCAATGCTTCTGGTCTTAGATCTTTAAGAACAATTGAAACTCCGGCATTTGAAGCATTGAGGTCACCCATTGAATCTACTCCAATTAAGGTATCTGGCTCTTCTACTGTTAATGTTAGTCCGGTCAACTGTAAAGTGGAAAGAAGTTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGCCGAAGTGTAGAGAAACCAAGAACTGTGGAAGATGTAACAGATAGAGCTAAACCATGGCAACTATCTGAAATTCTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGAGAGCACAGATTCTTCCAGCAAGGTTATTAGACTTTTATATACAAACTCTGCTGTTGGTATTTTGGCCCTTGGTTCAAATGGTATCCAGAAGCTTTGGAAATGGGCTCGTAGTGAACTGAATCCTACTGGGAAGGCTACTGCCAATGTTGTTCCACTGCATTGGCAACCCAACAACGGTCTTCTTATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCTTATGTTATGTCTGCCTGTGGTGGAAAGGTTTCTCTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCGCCTCCTGCTTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATTGCCATTGGGATGGACGATTCAACCATTCACATCTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAAGGCCACCAGAAGCGTATTACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCATCTTTGTGTGTGGAGTATAGATACATGGGAGAAAAGAAAAGCAATTCCAATACAACTACCCGCAGGAAAGTCACCTGTTGGTGATACACGCGTACAGTTCCATTCCGATCAACTTCGCTTATTGGTAGTTCATGAGACTCAATTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGTCTGCCCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTGTGATGCCAACATTGGTGTTTTTGATGCTGATAGCTTGAGGCTCAGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAACCAGTTTGCGGTTGGGTTGACGGATGGATCTGTCAAAGTGATAGAACCGAACGAGTCAGAGGGTAAGTGGGGAACCTGCCCACCAACGGACAATGGAATATTGAATGGTAGAACAGGATCATCATCTACAACAAGCAACCACACTGCTGATCAGGCTCAAAGATAA 3390 0.4283 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVPILKRPRTPPANPGMVDYQNADHDQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGSFVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNRFLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILANASGLRSLRTIETPAFEALRSPIESTPIKVSGSSTVNVSPVNCKVERSSPVRPSPILNGVDPMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTNSAVGILALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKAIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFAVGLTDGSVKVIEPNESEGKWGTCPPTDNGILNGRTGSSSTTSNHTADQAQR* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1372 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Gso10g1372 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1129 IPR027728 GO:0006355
Gso10g1372 1129 MobiDBLite consensus disorder prediction 703 724 - -
Gso10g1372 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Gso10g1372 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 491 IPR001680 GO:0005515
Gso10g1372 1129 Gene3D - 407 670 IPR015943 GO:0005515
Gso10g1372 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Gso10g1372 1129 MobiDBLite consensus disorder prediction 1092 1129 - -
Gso10g1372 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Gso10g1372 1129 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 908 1095 IPR011044 -
Gso10g1372 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Gso10g1372 1129 SMART ctlh 34 92 IPR006595 -
Gso10g1372 1129 Gene3D - 328 385 IPR015943 GO:0005515
Gso10g1372 1129 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 348 948 IPR011047 -
Gso10g1372 1129 Coils Coil 1124 1129 - -
Gso10g1372 1129 Gene3D - 779 1101 IPR015943 GO:0005515
Gso10g1372 1129 PANTHER PROTEIN, PUTATIVE-RELATED 1 1129 - -
Gso10g1372 1129 MobiDBLite consensus disorder prediction 1106 1129 - -
Gso10g1372 1129 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Gso10g1372 1129 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Gso10g1372 1129 SMART Lish 4 36 IPR006594 GO:0005515
Gso10g1372 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Gso10g1372 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 574 614 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 484 525 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 528 571 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 999 1035 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 397 435 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 439 482 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 335 374 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 904 943 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 822 858 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 1049 1090 IPR001680 GO:0005515
Gso10g1372 1129 SMART WD40_4 861 901 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1372 Gso-Chr10 40132155 40140771 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1372 - - gmx:100793517 2225.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1942 19 48111321 48120756 Gso10g1372 10 40132155 40140771 PCT
Gso3g1982 3 45318139 45327267 Gso10g1372 10 40132155 40140771 PCT
Gso10g1372 10 40132155 40140771 Gso19g1942 19 48111321 48120756 PCT
Gso10g1372 10 40132155 40140771 Gso3g1982 3 45318139 45327267 PCT