Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1884 ATGCTTCGCCTGAAAGCGTTTCGGCCTACGAGCGATAAAATCGTTAAGATCCAATTGCATCCTACGCATCCATGGATGGTGACAGCCGATGATTCAGATCGAGTCTCGGTTTGGAACTGGGAGCACCGCCAGGTGGTTTATGAGTTGAAAGCTGGCGGAGTGGATGAACGGCGTTTGGTCGGCGCCAAGTTGGAGAAGCTCGCCGAGGGAGAAACAGAGTCAAAAGGGAAGCCGACAGAAGCCATTCGGGGAGGAAGTGTTAAGCAGGTGAATTTTTATGATGATGATGTACGCTTTTGGCAACTTTGGCATAATCGCTCTGTGGCTGCTGAAGCTCCAACAGCTGTCCATACTTCAGCTTTTAGCTCTCTTGCCCCATCAACAAAAGGGAGACATTTTCTTGTCATATGTTGTTTAAACAAAGCTATATTTTTGGACTTGGTGACCATGCGTGGCCGTGATGTACCAAAGCAAGAGCTTGATAATAAGTCCCTTCTATGCATGGAGTTCCTTTATAGAACAGGTGGTGATGGTCCTCTTGTTGCTTTTGGTGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAGCTTGTGCGAAGGTACACTGGAGGTCATAAGGGGTCTATCTCTTGCTTGATGTCATTCATGGCTGCTTCTGGTGAGGCTCTTCTGGTTTCGGGTGCTAGTGATGGATTGCTCATAATTTGGAGTGCTGACCACGGACAGGATTCACGTGAACTTGTACCCAAGCTGAGTTTAAAAGCACATGATGGAGGGGTTGTGGCAGTTGAGTTGTCAAGGGTGATGGGAGGTGCTCCTCAGCTAATCACAATTGGTGCAGATAAGACATTAGCCATATGGGACACCGTCTCCTTTAAGGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGGGCAATTGAACATCCCACTTATTCTGCTCTCACAAGGCCATTGTGTGAATTGACCTCAGTTATTCCTCCACAAGCCCTTGCTCCTAATAAGAAACTGAGGGTGTATTGTATGGTTGCACATACTTTGCAGCCGCATCTTGTAGCTGTTGGAACCAACATTGGTGTTATTATCTGTGAGTTTGATGCTAGATCTCTTCCACCTGTTGCTCCTCTACCAACCCCATCAGACAGTAGAGAGCATTCTGCCATATTTGTAATTGAAAGGGAATTAAAGCTATTAAATTTTCAGTTAAACAACTCTGCAAATCCATCTCTTGGAAATAACAGCTCCTTGTCAGAAACAGGAAGACCCAAGGGAGATTTTTTTGAACCATTACCTGTCAAGCAGGGGAAGAAGCACATAAGTACTCCTGTTCCACATGATTCACATTCAGTTCTTTCTGTCAGCAGTTCAGGAAAGTATCTAGCAATTGTTTGGCCAGATATTCCTTATTTCTCTGTCTACAAGGTTAGTGATTGGTCAATTGTTGACTCTGGAAGTGCAAGACTTCTCGCTTGGGATACTTGTCGTGACAGATTTGCTATATTGGAATCAGCATTACCACCTAGAATTCCTATAGTTCCCAAGGGTAGTTCATCAAAAAGAGCGAAAGAAGCTGCTGCGGCACAAGCAGCAGCCGCAGCTGCTGCTGCTGCTTCCACAGCTTCTGTTCAAGTCCGCATCTTGTTAGATGATGGAACATCAAATATACTGATGAGGTCTGTTGGCACACGCAGTGAACCAGTCATTGGTTTGCATGGAGGGGCACTGCTTGGTGTTGCCTATCGAACATCTAGGAGAGTCAGTCCTATTGCTGCTACAGCTATTTCAACAATCCAGTCGATGCCCTTATCAGGCTATGGAAGCAGTGGTGTTTCTTCTTTTACTACTTATGATGATGGATTTTCTTCACAAAGACCTCCTACTGAGGCAGCACCTCAAAACTTCCAGTTATACAGTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTCGAGTACTGTGCATTCGCATACCAGCAATATATAATCATATCTTCTTTACGCCCTCAATATAGATACTTGGGAGATGTTGCAATCCCATATGCTACTAGTGCTGTTTGGCACCGGAGGCAACTGTTTGTGGCTACCCCAACTACTATAGAAATTGTTTTTGTCGACGCTGGGGTTGCTCAAATTGACATTGCAACTAAGAAGATGAAAGAAGAGCAAAAAATGAAAGAAGCACAGGCAAGAGCAGTCGCAGAGCATGGAGAGTTAGCACTAATTACTGTAGAAGGTATCCAGTCTGCCAAGGAAGAAAGAATAGCATTGAGGCCACCAATGTTGCAGGTGGTTCGGTTGGCTTCATTTCAGCATGCTCCTTCAGTTCCACCTTTCTTATCATTACCAAAACAATCTAGAGTTGATAGTGATGACTCTTGGATGGCAACAGAAGAGAGAAAGGCAGGTGAGGTGGCAGTTGGTGGTGGTGGGGTGTCTGTGGCTGTTACTCGTTTTCCAATGGAGCAGAAGCGTCCTGTTGGGCCTCTTGTGGTTGTAGGTGTCAGGGATGGAGTTCTTTGGCTAATTGACAGGTACATGTGTGCTCATGCCTTATCCTTGAGTCATCCTGGTATTCGTTGCCGATGTCTTGCTGCTTATGGTGATGCTGTTAGTGCAGTAAAATGGGCAAGTAGACTTGGAAGAGAACACCATGATGATTTAGCACAATTTATGCTAGGAATGGGCTATGCTACTGAAGCACTTCATTTGCCTGGAATATCTAAGAGGTTAGAGTTTGATTTGGCAATGAAGAGCAATGATTTGAAAAGAGCTCTTCATTGTCTTCTTACCATGAGTAACAGCAGGGATATAGGACATGATGGTACTCAAGGACTTGGTTTGAATGACATTCTTAGTTTATCAGATAAAAAACCAGATAAAGTATCAGATAAAAAACAAGATATAGTTGAAGGTGTTCAGGGTATAGTGAAATTCGCAAAAGAGTTCTTGGATCTTATTGATGCTGCAGATGCTACAGCACAGAGTGAAATTGCCCGTGAGGCTCTCAAGAGGTTAGCTGCAGCTGGTTCGGTGAAAGGTGCTTTAGAAGGTCATGAATTGAGAGGATTAGCATTACGCCTTGCAAATCATGGAGAGTTGACTCGGCTAAGTGGTTTGGTTAACAACTTAGTCATGCTTGGCTTGGGACGGGAAGCTGCATTTGCTGGTGCTGTTTTGGGCGACAATGCTCTGATGGAGAAAGCATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATGCACATGGACGTCCAACTTTGAAGAACTTAGTTCAGGCTTGGAACCAAGAGCTGCAGAGAGAGGTTGAACCTACTCCATCACAGAAGACAGATGCTGCAGCTGCGTTTTTAGCTTCTCTTGAGGAGCCTAAGCTCACAAGTTTGGCAGATGCAGGGAAGAAACCACCTATTGAAATCCTGCCTCCGGGGATGCCGCCTCTTAATGGTCCTATTTCCATCCAGAAAAAACCAGCTTCTGCTGCACAGAATTCCCAACAACCCCCAGGCAAGATATTGGCACTGGAAGCACCTCCTACAACCACAGCTGCACCAGAGAGTGCCACACAGCACCCTGAATCCACACCTGCATCAGGTAATGATCCACCTCCATCAGAGTCTACCTCAGACTCCACGCCAGCTCCTGCGGCTGCTCCACCGCAACCGGAATCAGGTGAAAGCACTGTAGAAAATGGCATTCCTACGTCTACACCAGCAAGTGATGGAGATCCAAATGTTAATGGTGAAAATGTTCAAGCAGCATCTACGGGCAATCCAGCACCAGCACCAGCTCCACCGGAGGCCCCCTTATCACCAGCAGGGGTTTCAGAGACTACTGCTCCAAGTCCACCTACAGTTCCTATGAGTGATCCCTTTATATGA 4011 0.46 MLRLKAFRPTSDKIVKIQLHPTHPWMVTADDSDRVSVWNWEHRQVVYELKAGGVDERRLVGAKLEKLAEGETESKGKPTEAIRGGSVKQVNFYDDDVRFWQLWHNRSVAAEAPTAVHTSAFSSLAPSTKGRHFLVICCLNKAIFLDLVTMRGRDVPKQELDNKSLLCMEFLYRTGGDGPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGSISCLMSFMAASGEALLVSGASDGLLIIWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGAPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELTSVIPPQALAPNKKLRVYCMVAHTLQPHLVAVGTNIGVIICEFDARSLPPVAPLPTPSDSREHSAIFVIERELKLLNFQLNNSANPSLGNNSSLSETGRPKGDFFEPLPVKQGKKHISTPVPHDSHSVLSVSSSGKYLAIVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALPPRIPIVPKGSSSKRAKEAAAAQAAAAAAAAASTASVQVRILLDDGTSNILMRSVGTRSEPVIGLHGGALLGVAYRTSRRVSPIAATAISTIQSMPLSGYGSSGVSSFTTYDDGFSSQRPPTEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQQYIIISSLRPQYRYLGDVAIPYATSAVWHRRQLFVATPTTIEIVFVDAGVAQIDIATKKMKEEQKMKEAQARAVAEHGELALITVEGIQSAKEERIALRPPMLQVVRLASFQHAPSVPPFLSLPKQSRVDSDDSWMATEERKAGEVAVGGGGVSVAVTRFPMEQKRPVGPLVVVGVRDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMKSNDLKRALHCLLTMSNSRDIGHDGTQGLGLNDILSLSDKKPDKVSDKKQDIVEGVQGIVKFAKEFLDLIDAADATAQSEIAREALKRLAAAGSVKGALEGHELRGLALRLANHGELTRLSGLVNNLVMLGLGREAAFAGAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTLKNLVQAWNQELQREVEPTPSQKTDAAAAFLASLEEPKLTSLADAGKKPPIEILPPGMPPLNGPISIQKKPASAAQNSQQPPGKILALEAPPTTTAAPESATQHPESTPASGNDPPPSESTSDSTPAPAAAPPQPESGESTVENGIPTSTPASDGDPNVNGENVQAASTGNPAPAPAPPEAPLSPAGVSETTAPSPPTVPMSDPFI* 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1884 1336 Gene3D - 3 349 IPR015943 GO:0005515
Gso19g1884 1336 MobiDBLite consensus disorder prediction 1199 1213 - -
Gso19g1884 1336 Gene3D - 902 1159 - -
Gso19g1884 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 300 IPR001680 GO:0005515
Gso19g1884 1336 PANTHER TSET COMPLEX MEMBER TSTF 1 1272 - -
Gso19g1884 1336 MobiDBLite consensus disorder prediction 1171 1336 - -
Gso19g1884 1336 MobiDBLite consensus disorder prediction 1267 1300 - -
Gso19g1884 1336 PANTHER BNAC07G49640D PROTEIN 1 1272 - -
Gso19g1884 1336 SMART WD40_4 249 291 IPR001680 GO:0005515
Gso19g1884 1336 SMART WD40_4 1 39 IPR001680 GO:0005515
Gso19g1884 1336 SMART WD40_4 197 240 IPR001680 GO:0005515
Gso19g1884 1336 MobiDBLite consensus disorder prediction 1225 1257 - -
Gso19g1884 1336 SUPERFAMILY WD40 repeat-like 5 307 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1884 Gso-Chr19 47564078 47577310 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1884 - - gmx:100786844 2488.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1884 19 47564078 47577310 Gso3g1919 3 44738275 44750812 GST