Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1880 ATGGGTTGGAATGGACGTCTCAAAAACATGGTCATCGTGATTACTTTAATGGTGGCCTTGGTTGTTGTTCAACATGTGAAGTGTGGGGACTCAGCTCGCATATTGCTTCAGCATGGTGGCTTCGTTCAACGAAGTAGCACCAACTTCGTTCTGAATAACAAGCGTTTCTACTTCAACGGATTCAACGCGTACTGGTTAATGTACATGGCATCTGACCCATCCACAAGGCCCAAGGTCACTGCCGTTTTGCAACAAGCTTCCAACCATGGCTTAACTGTTGCTAGAACTTGGGCTTTCAGTGATGGAGGTTACAGAGCACTTCAGGTTTCTCCCGGTTCCTACGACGAGAAAGTATTCAGGGGATTGGACTTTGTAGTATCAGAAGCGGGAAAATATGGGGTGCGTTTGATACTGAGCTTGGTGAACAACTGGAAAGATTTTGGTGGGAAAAATCAGTATGTGCAATGGGTAAAGGAACATGGACAGTACGTGAACAGCGAAGATGATTTCTTTTCACATCCTATTGCTAAGCAACACTACAAAAACCATATTAAGGCTGTGCTGACAAGAAAAAACACAATAACTGGGGTGGCATATAAGGACGATCCTGCCATATTTGCGTGGGAACTTATGAATGAACCCCGTTCCCAACACGACAACTCCGGAAAAGTTATTCAGCAATGGGTGATTGAGATGGCTGCCTACGTCAAATCCATCGATAGCAATCATTTGCTGGAAATAGGACTCGAAGGGTTCTATGGTGAAACAATGCCAGAGAAAAAACAAATCAATCCAGGGTACCAACTTATTGGCACTGATTTCATTTCTAACAACCTAGTTCACCAAGTTGATTTTGCTACCATGCATCTCTACCCTGAACAATGGTTGCCAGGCTCAAACGAAGCTGCTCAGGTTGCATTTGTTGACAAATGGCTACAAACACACATTCAAGATGCCAAAAATGTTCTGGCGAAGCCTATTGTTGTTGGTGAGTTTGGCAAGTCTTTGAAGTCATATAGCGTGGTTGAAAGGGACAATTACTTGAGCAAAATGTATAATGCCATATACAGTAGTGCTAGTAGTGGGGGACCCTGTGCGGGTGGGCTTTTTTGGCAACTCATGGCTCAAGGAATGGATGGTTTTCGTGATGGTTATGAAGTTGTTTTCGAGGAGAGTCCTTCAACTACCAGAATTATAGATCAGCAATCCCACAAAATGTCAAGTATTGCTTAG 1233 0.4363 MGWNGRLKNMVIVITLMVALVVVQHVKCGDSARILLQHGGFVQRSSTNFVLNNKRFYFNGFNAYWLMYMASDPSTRPKVTAVLQQASNHGLTVARTWAFSDGGYRALQVSPGSYDEKVFRGLDFVVSEAGKYGVRLILSLVNNWKDFGGKNQYVQWVKEHGQYVNSEDDFFSHPIAKQHYKNHIKAVLTRKNTITGVAYKDDPAIFAWELMNEPRSQHDNSGKVIQQWVIEMAAYVKSIDSNHLLEIGLEGFYGETMPEKKQINPGYQLIGTDFISNNLVHQVDFATMHLYPEQWLPGSNEAAQVAFVDKWLQTHIQDAKNVLAKPIVVGEFGKSLKSYSVVERDNYLSKMYNAIYSSASSGGPCAGGLFWQLMAQGMDGFRDGYEVVFEESPSTTRIIDQQSHKMSSIA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1880 410 Gene3D Glycosidases 37 410 - -
Gso19g1880 410 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 14 409 - -
Gso19g1880 410 PANTHER - 14 409 IPR045053 GO:0004553
Gso19g1880 410 Pfam Cellulase (glycosyl hydrolase family 5) 57 354 IPR001547 GO:0004553|GO:0071704
Gso19g1880 410 SUPERFAMILY (Trans)glycosidases 41 400 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1880 Gso-Chr19 47519034 47524018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1880 13 409 Glycoside Hydrolase AT5G66460 55.138 2.95e-161 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1880 K19355 - gmx:100787923 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1880 19 47519034 47524018 Gso3g1915 3 44697058 44701522 GST