Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1868 ATGACATCCTCAGTTCCCTTGGTCTCCACCTTATTGCTTTGCTCTATTGCTCTTCTCTACTCTGCATCATTTGGAGCTGAAGCATGGACCTCGCCCTACATACCCGTCTCTTCCCTCATCAGCAAAAGTCTTTATGACACATTTTTCCTTCACAAAGATGACACTGCATGCCCTGCCAAAGACTTCTACCCCTACGACGCCTTCATTCGTGCATCCAAATCCTTCCCTGCGTTTGGTACCACCGGATGTTTAGCAACACGCAAGCGTGAGATTGCTGCGTTTCTCGCTCAGATTTCCCACGAAACCACTGGCGGCTGGGCCACCGCACCCGACGGCCCATTTGCATGGGGTCTCTGCTTCAAGGAAGAAATTAGTCCTCAGAGTAATTACTGTGATTCTACTAACACCCAATGGCCTTGTTTCCCAGGCAAAAGCTACAAGGGTCGAGGACCCATTCAACTTTCTTGGAACTACAACTATGGTCCAGCAGGGAAGGCTTTGGGATTTGATGGGCTGAGGAACCCAGAGATTGTGGCGAACAATTCTGTGATAGCCTTCAAAACTGCTATGTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCATGCCACAATGTGATGGTTGGGATATATGTGCCGACAGAAGATGACATAGCAGCAAACCGAACAGCGGGTTATGGTTTGGTGACTAACATAATCAATGGTGGACTGGAATGTGGGATTCCTGGTGATGCAAGAGTGAATGATCGGATTGGGTTTTTCGAAAGGTATACGAAGTTGTTCAACGTGGACACTGGACCTAACTTGGATTGTGCATATCAGAAACCCTTCTAA 834 0.476 MTSSVPLVSTLLLCSIALLYSASFGAEAWTSPYIPVSSLISKSLYDTFFLHKDDTACPAKDFYPYDAFIRASKSFPAFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEISPQSNYCDSTNTQWPCFPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSVIAFKTAMWFWMTEQKPKPSCHNVMVGIYVPTEDDIAANRTAGYGLVTNIINGGLECGIPGDARVNDRIGFFERYTKLFNVDTGPNLDCAYQKPF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1868 277 SUPERFAMILY Lysozyme-like 36 277 IPR023346 -
Gso19g1868 277 Gene3D - 43 277 - -
Gso19g1868 277 Gene3D Endochitinase, domain 2 122 180 - -
Gso19g1868 277 Pfam Chitinase class I 39 271 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso19g1868 277 CDD chitinase_GH19 40 271 - -
Gso19g1868 277 PIRSF Endochitinase 8 277 IPR016283 GO:0004568|GO:0005975
Gso19g1868 277 ProSitePatterns Chitinases family 19 signature 2. 184 194 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso19g1868 277 PANTHER CHITINASE-RELATED 6 277 - -
Gso19g1868 277 PANTHER OS05G0138200 PROTEIN 6 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1868 Gso-Chr19 47376411 47378133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1868 35 277 Glycoside Hydrolase AT4G01700 75.720 2.33e-148 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1868 - - gmx:100784196 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1868 19 47376411 47378133 Gso2g0065 2 760154 761758 PCT
Gso2g0065 2 760154 761758 Gso19g1868 19 47376411 47378133 PCT