Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1680 ATGATGGATCCGGCGATGACGCCGCTGGGGCAAATGCTATTGGAGGAGATCACTCCCGTGGTCATGCTCCTCTCAACTCCTTCCGTCGAAGAAGCTTCCCTCAAGAACGGCCTCTCCTTCCTCCAGACGCTAACGCCGTTCTGCTCCTTCAACAACATCGACGTTCCTGTTAGGACCGCCAGTGACCAACCTTATCGCCTTCACAAGTTCAAATTGCGTTTGTTCTACGCTTCCGATGTGAGGAAGCCCGATATGAAGGTAGCTAAAGAGCAGCTGAAGCAAGTTATCACAGAGGCAGGGGAGAAAGAGTTTTCTGAGTCTTGTTCAGATGTGTCGGAAATTAATCATGAATTTTCGTCGAGTTCTGAATACCAAAATACACCTTCCTGGTTTCGGTTTCTCAATAAAGAGCTTGTTCGTGTGGCTTCCTTTTCAGACCATGAAGCATTTGACCATCCTGTGATATGTCTTGTAGCTGTTTCATCAAAGGATGAACAACCTATTAGCAGATTTGTTGACCTTTTTAATACCAACAAGCTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAAAGTTTCAAAGCGTTACTTGTTAGTGCATGATAATCAAGATGGCCCTGCAGACAGAGCTAGTAAAATATTGACAGATATGAGGAGTACATTTGGGGCAAGTGACTGTTCGTTGCTTTGCATTAATTCTTCCCTGGATACTCCAATCAAAACTCAAGATAATCCTTGGGCTTCATATATAACTGATGCCTCACCTACTCCTAGTCAAGATCTTGGTTGCTTTCTCAACATTGATGATATCAACGAGATAAAAGATCTAATGCAAGATTTAGCATCCAAGTACATCATTCCAAATATGGAGCAAAAAATTCGTTTACTCAATCAACAGGTTTCTGCAACACGAAAAGGGTTTAAAAACCAAATAAAAAATTTATGGTGGAGAAAAGGGAAAGAAGACGGTGCAGATTCTCTCAATGGTCCCACGTATGACTTTAATTCCATTGAATCCCAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTACGAGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCCACCGATTACAAGATTGATAAAGCCTGGAAGCGTTATGCTGGTGTGCAGGAAATGATGGGACTTACGTACTTCATGTTGGATCAATCAAGAAAGGAAGCTGAGTATTGCATGGAAAATGCTTTTAACACATATTTAAAACTTGGATCGTTGGGTCAGCTAAATGCAACACGATGTGGTCTGTGGTGGATAGAAATGTTAAAGGCACGTGATCAATATAAGGAGGCAGCTACTGTTTATTTTCGTATTTGTGGTGAGGATATCCTACATTCTGCTGTGATGCTTGAACAAGCATCGTATTGCTACTTGTTGTCTAAACCCTCTATGTTACGCAAATATGGATTTCATCTAGTGCTTTCTGGTGAGCAGTATAAAAAGTGTGATCAGATCAAACATGCAATTCGAACATACAGAAGCGCTCTTTCTGTTTTTAGAGGAACTACTTGGAGTTATATAAATGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGATGTATGACGTGGCTGTCAAGCATATGACGGAAATCCTGGCCTGTAGTCACCAGTCCAAGACAACACAGGAATTATTCCTGGGCGACTTTCTTCAAATTGTGGAGAAAACTGGACGGATGTTTGAGGTAACAAAACTTCAATTGCCTGTAATCAACATCTCTTCACTCAAGGTCATCTTCGAAGATTACCGAACTTTTGGAACACCTTCAGCTGCTAATACTAGAGAAGGCTTGTGGCGTTCTTTGGAGGAGGAAATGCTACCATCATTCTCTGCTGCCAAGACAAATTGGTTGGAGTTGCAATCAAAGCTTATCCCAAAGAAGCACAGTCAATCCAATGTTTGTGTTGTAGGCGAAGCTGTGACGGTGAATATCGAATTTAAAAATCCTCTACAAATCTCAATTCCCATATCTGGTGTTACACTTGTATGCAAGTATTCTGCCAGTACTGATGATGTTAGATCAGATGAGAATGAGTCAAGTGTGGAGAAAGATAATGAGGTTGACCACTTTGGGAATATGAGCTCTGACAGTTCCTCATTTATGGTGTCTGATGTTGATTTCTTACTAGGAGGTGGTGAAACAACCATGATTCAACTATCAGTTACTCCCAGGGCAGAGGGTTCTCTTGAAATTCTTGGTGTTAGGTGGAAATTGTCTGGTACAATAGTTGGCTTTCACAACTTTAAGTTGGGCCACCCAAAGAAGATTATAAAAGGAAGAAGGAAAAAAAATCACTTGCCAAATGAGAAATTTAAATTTATGGTGATTAAGAGCATACCCAAGCTTCAGGGTTCCATTCACCCTCTACCTGGAAAGACATATGCTGGAGATTTACGACAACTTGTTTTGGAATTGAGGAATCCATCAGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCATCCTAGATTCCTGATAATTGGGAAACAAGAAAATATGAAGTCAGAGTTTCCTGCGTGCTTAAGAAAGAGGACAGTTGCAGTACCAAGTGATGTGTATGCTAATTCTAATATCATGTCTGACACAGTCTTTTTGTTTCCAGAGGGCACATCAGTTCAAGGTGAAACACCCTTCTTGTGGCCTCTTTGGTTTAGGGCTGCTGTTCCAGGTGATACATCACTTTACATGAGCATATATTATGAGATGGGAGATGCATCAAGTGTCATCAAGTATCGTACTCTTCGCTTGCATTACAATGTGCAGGTATTACCGTCGTTGGATGTCTCATTTCAAATAAGTCCTTCTCGATTAAAATTACAAGAATTTCTTGTTCGATTGGATGTTGTTAACAAGACTAGCTCAGAAAGTTTCCAAGTTTATCAGTTGTCGTCTGTTGGTCTCCACTGGGAAATCTCATTACTTCAAGCTCCTGATACTATTTTTCCTTCACAATCATTGAAGGCTGGCCAAGCAATATCTTGTTTCTTTACGCTAAAGAATTCTTCGAGGTTTTTGACATTGGAGGACAACATATCTACATTACCTGTCAGAAGTGATGTAAGATTGGTACCCCAAAGCAGTGAGGATTTAGTTTATGATATAAACAGTGCACCTTTGTTCAATTTCCACCATTATGAAAGATTGCAGCAGGAAGTTTCATATGAGGGTGACTTAAATACTGTTGATTTTGTATTGATCTCTCGGCCATTCAAGAGTAATGACGATCCGGGTTTTCCCAATCCTCCTCATGTTATGTCTCATCATGCGTGTCACTTCAGTACTGCTAGCACGGGCCCTATTTCATGGCTAGTGGATGGACCTCAAACCTTGCACCATGACTTCTCTGCATCGTTCTGTGAAATAAGTCTGAAGATGCATATTTACAATTCTTCTGGTGCCACTGCTTTTGTACGCATTGACACCTTAGATTCTGCTGGTAATGGTGGACACATGAACAGTGTAAATGTGGTTCAATCAGCAACTACTGATAACCAAGCAGGGTGGCATGATATTACACCAGTGAATGAACTGAAAGTCACATCAAATGTTCTTGAAACCCAACCAGGAAAGGCACCATCATTGGAAAGTGTGTCCTCATATATTTGGTCTGGATCAATCTCAACCAATCTCCACATTGATGCTATGTCCTCTGCAGAAATTCCTCTTCAGATCTGTGTGTTCTCTCCTGGGACATACGACCTGTCAAATTATGTTTTGAATTGGAAACTTCCATCCAATGGTAAGGGAGATAGTGATGAAACGAGGCAGCATTCAGGCAAGTGCCAGGGCTATAAATACTATCTTACCGTGCTTCAGTCCACTTGA 3870 0.4085 MMDPAMTPLGQMLLEEITPVVMLLSTPSVEEASLKNGLSFLQTLTPFCSFNNIDVPVRTASDQPYRLHKFKLRLFYASDVRKPDMKVAKEQLKQVITEAGEKEFSESCSDVSEINHEFSSSSEYQNTPSWFRFLNKELVRVASFSDHEAFDHPVICLVAVSSKDEQPISRFVDLFNTNKLPSLLNDGAMDPKVSKRYLLVHDNQDGPADRASKILTDMRSTFGASDCSLLCINSSLDTPIKTQDNPWASYITDASPTPSQDLGCFLNIDDINEIKDLMQDLASKYIIPNMEQKIRLLNQQVSATRKGFKNQIKNLWWRKGKEDGADSLNGPTYDFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFNTYLKLGSLGQLNATRCGLWWIEMLKARDQYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMLRKYGFHLVLSGEQYKKCDQIKHAIRTYRSALSVFRGTTWSYINDHVHFHIGQWYASLGMYDVAVKHMTEILACSHQSKTTQELFLGDFLQIVEKTGRMFEVTKLQLPVINISSLKVIFEDYRTFGTPSAANTREGLWRSLEEEMLPSFSAAKTNWLELQSKLIPKKHSQSNVCVVGEAVTVNIEFKNPLQISIPISGVTLVCKYSASTDDVRSDENESSVEKDNEVDHFGNMSSDSSSFMVSDVDFLLGGGETTMIQLSVTPRAEGSLEILGVRWKLSGTIVGFHNFKLGHPKKIIKGRRKKNHLPNEKFKFMVIKSIPKLQGSIHPLPGKTYAGDLRQLVLELRNPSEFPVKNLKMKISHPRFLIIGKQENMKSEFPACLRKRTVAVPSDVYANSNIMSDTVFLFPEGTSVQGETPFLWPLWFRAAVPGDTSLYMSIYYEMGDASSVIKYRTLRLHYNVQVLPSLDVSFQISPSRLKLQEFLVRLDVVNKTSSESFQVYQLSSVGLHWEISLLQAPDTIFPSQSLKAGQAISCFFTLKNSSRFLTLEDNISTLPVRSDVRLVPQSSEDLVYDINSAPLFNFHHYERLQQEVSYEGDLNTVDFVLISRPFKSNDDPGFPNPPHVMSHHACHFSTASTGPISWLVDGPQTLHHDFSASFCEISLKMHIYNSSGATAFVRIDTLDSAGNGGHMNSVNVVQSATTDNQAGWHDITPVNELKVTSNVLETQPGKAPSLESVSSYIWSGSISTNLHIDAMSSAEIPLQICVFSPGTYDLSNYVLNWKLPSNGKGDSDETRQHSGKCQGYKYYLTVLQST* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1680 1289 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 189 522 IPR024420 -
Gso19g1680 1289 Gene3D Tetratricopeptide repeat domain 332 557 IPR011990 GO:0005515
Gso19g1680 1289 SUPERFAMILY TPR-like 433 554 IPR011990 GO:0005515
Gso19g1680 1289 PANTHER TRANSPORT PROTEIN TRAPP 8 1288 IPR024420 -
Gso19g1680 1289 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 640 829 IPR013935 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1680 Gso-Chr19 45712938 45731918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1680 K20305 - gmx:100813062 2586.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1680 19 45712938 45731918 Gso3g1711 3 42960637 42980846 GST