Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1562 ATGCGGGGTGGTGTTTCCCTGTTGTTGGCGTTAGCCTCCGTGGCGGCGGCGGCGACGGTGTCGTGCGGTGGTTTGGCGGGGACTTTTCTTCCTCTGGAACGGGCCATTCCTCTGAACCAGCAAGTGGAGCTGGAGGCGCTGAGAGCTCGCGACAGAGCACGCCACGGTCGAATCTTGCAAGGTGTCGTCGGTGGCGTCGTAGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGGTTGTATTTTACGAAAGTGAAGTTGGGATCCCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGATAAATTGCATAACTTGCAGTAATTGCCCTCATTCTAGTGGATTGGGGATTGAGCTTGATTTCTTTGACACGGCCGGCTCGTCCACTGCTGCGCTTGTTTCCTGTGGGGACCCGATATGTTCGTATGCGGTTCAAACTGCGACAAGTGAATGCTCTTCTCAGGCTAATCAGTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACTACTGGTTATTATGTTTCTGATACAATGTATTTTGACACGGTCCTCCTCGGACAGTCTGTGGTTGCTAACTCTTCATCCACCATCATTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTATATCACAATTGTCATCACGGGGTGTAACACCCAAAGTGTTCTCTCATTGCTTAAAAGGAGGAGAGAACGGAGGAGGCGTGCTAGTTCTTGGTGAAATTTTGGAACCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCCCAATTGATTCAAATGTATTTGCAACAACTAACAATCAAGGAACAATAGTTGACTCTGGCACAACATTGGCATACCTTGTTCAAGAAGCTTACAATCCTTTTGTCAAAGCTATAACTGCTGCTGTGTCACAGTTTTCAAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGCGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGCGGAGCATCTATGGTTTTGAATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATTGGCTTCCAAAAAGTGGAGCAGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTAGCTAATCAACGAATTGGATGGGCCGATTATGATTGTTCCTTGTCTGTGAACGTCTCTCTGGCTACCAGCAAGAGCAAGGATGCATACATCAACAATTCAGGACAGATGAGTGCGAGCTGCTCCCACATAGGCACTTTCTCCAAGTTGTTAGCTGTAGGCATTGCTGCTTTCCTTGTGCACATAATAGTTTTCATGGAGTGCCAATTTTTGTAA 1509 0.4553 MRGGVSLLLALASVAAAATVSCGGLAGTFLPLERAIPLNQQVELEALRARDRARHGRILQGVVGGVVDFSVQGTSDPYFVGYGLYFTKVKLGSPAKEFYVQIDTGSDILWINCITCSNCPHSSGLGIELDFFDTAGSSTAALVSCGDPICSYAVQTATSECSSQANQCSYTFQYGDGSGTTGYYVSDTMYFDTVLLGQSVVANSSSTIIFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGGENGGGVLVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSNVFATTNNQGTIVDSGTTLAYLVQEAYNPFVKAITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLNPEHYLMHYGFLDGAAMWCIGFQKVEQGFTILGDLVLKDKIFVYDLANQRIGWADYDCSLSVNVSLATSKSKDAYINNSGQMSASCSHIGTFSKLLAVGIAAFLVHIIVFMECQFL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1562 502 Pfam Xylanase inhibitor N-terminal 85 271 IPR032861 -
Gso19g1562 502 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Gso19g1562 502 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 463 - -
Gso19g1562 502 PANTHER ASPARTYL PROTEASES 5 463 IPR001461 GO:0004190|GO:0006508
Gso19g1562 502 CDD pepsin_A_like_plant 85 444 IPR034161 -
Gso19g1562 502 Pfam Xylanase inhibitor C-terminal 289 440 IPR032799 -
Gso19g1562 502 Gene3D Acid Proteases 273 450 IPR021109 -
Gso19g1562 502 SUPERFAMILY Acid proteases 80 447 IPR021109 -
Gso19g1562 502 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Gso19g1562 502 PRINTS Pepsin (A1) aspartic protease family signature 319 330 IPR001461 GO:0004190|GO:0006508
Gso19g1562 502 PRINTS Pepsin (A1) aspartic protease family signature 416 431 IPR001461 GO:0004190|GO:0006508
Gso19g1562 502 Gene3D Acid Proteases 69 272 IPR021109 -
Gso19g1562 502 ProSiteProfiles Peptidase family A1 domain profile. 85 440 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1562 Gso-Chr19 44568845 44574516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1562 83 445 Miscellaneous Gene Families AT1G44130 27.649 7.20e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1562 - - gmx:100804147 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1562 19 44568845 44574516 Gso3g1581 3 41756840 41762658 GST
Gso19g1562 19 44568845 44574516 Gso10g0549 10 6142677 6149696 PCT
Gso10g0549 10 6142677 6149696 Gso19g1562 19 44568845 44574516 PCT