Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0549 ATGCGGTGTTGCATTCCGACGTTGTTGGCCGTAATCACCGTACTGTTGTCGGCGGTGCACGGCGTTTTCCTTCCTCTGGAGCGGAGCATTCCTCCGACGAGCCACCGCGTGGAGGTGGCGGCGCTGAGGGCCCGCGATAGAGCCCGCCATGCCCGCATGTTGCGCGGCGTCGTCGACTTCTCCGTCCAAGGCACCTCCGATCCAAACTCCGTTGGGTTGTATTATACGAAAGTGAAGATGGGAACTCCTCCTAAAGAGTTTAACGTTCAGATTGATACGGGGAGTGATATATTGTGGGTGAATTGCAATACTTGCAGTAATTGTCCTCAGTCTAGTCAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGCTCATCCACGGCAGCGTTGATTCCCTGCTCGGACCTGATATGCACTTCTGGAGTCCAGGGTGCTGCTGCTGAGTGCTCCCCGAGGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTATTATGTTTCGGATGCAATGTATTTTAACTTGATCATGGGACAGCCTCCGGCAGTTAACTCTACGGCTACCATTGTTTTTGGGTGTAGCATTAGTCAGTCTGGAGATTTGACTAAGACAGATAAGGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGACCTCTATCTGTTGTATCACAATTGTCATCTCAAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAGGGAGACGGCAATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACCTCTCCCAATTAATCCAGCTGTATTATCAATATCTAACAACCGAGGAGGGACTATAGTTGACTGTGGTACAACATTGGCATATCTTATTCAAGAAGCTTATGATCCTCTTGTCACTGCTATAAATACTGCCGTGTCACAATCTGCTAGGCAAACAAATTCCAAAGGAAACCAGTGTTATCTGGTCTCAACCAGTATAGGTGACATTTTTCCTTTGGTAAGTTTAAACTTTGAGGGTGGAGCATCAATGGTTTTAAAACCAGAGCAGTACCTTATGCATAATGGTTACCTTGATGGTGCAGAAATGTGGTGCGTTGGTTTCCAGAAATTGCAGGAGGGAGCCTCAATTTTAGGAGATCTTGTCCTAAAGGATAAGATAGTTGTGTATGACATAGCTCAACAACGAATTGGATGGGCTAACTATGACTGTTGGTCTGTAAATGTTTCGGTGACTATGAGCAAGGACGAGTACATCAATGCAGGGCAGCTTCATGTTAGCAGCTCCAAAATACACATTCTTTCTAAGTTACTACCTGAGGATGATATGCAGTTCAGGATCAAATTAACAACGTCAAAAGGCATGGATAGCTCTTATCTATCCAAGGCTCATCTTCCATTGCAATTCACATAA 1500 0.4553 MRCCIPTLLAVITVLLSAVHGVFLPLERSIPPTSHRVEVAALRARDRARHARMLRGVVDFSVQGTSDPNSVGLYYTKVKMGTPPKEFNVQIDTGSDILWVNCNTCSNCPQSSQLGIELNFFDTVGSSTAALIPCSDLICTSGVQGAAAECSPRVNQCSYTFQYGDGSGTSGYYVSDAMYFNLIMGQPPAVNSTATIVFGCSISQSGDLTKTDKAVDGIFGFGPGPLSVVSQLSSQGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQPLPINPAVLSISNNRGGTIVDCGTTLAYLIQEAYDPLVTAINTAVSQSARQTNSKGNQCYLVSTSIGDIFPLVSLNFEGGASMVLKPEQYLMHNGYLDGAEMWCVGFQKLQEGASILGDLVLKDKIVVYDIAQQRIGWANYDCWSVNVSVTMSKDEYINAGQLHVSSSKIHILSKLLPEDDMQFRIKLTTSKGMDSSYLSKAHLPLQFT* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0549 499 CDD pepsin_A_like_plant 74 433 IPR034161 -
Gso10g0549 499 Pfam Xylanase inhibitor C-terminal 277 429 IPR032799 -
Gso10g0549 499 Gene3D Acid Proteases 57 260 IPR021109 -
Gso10g0549 499 ProSiteProfiles Peptidase family A1 domain profile. 74 429 IPR033121 -
Gso10g0549 499 Pfam Xylanase inhibitor N-terminal 74 259 IPR032861 -
Gso10g0549 499 Gene3D Acid Proteases 261 441 IPR021109 -
Gso10g0549 499 SUPERFAMILY Acid proteases 71 435 IPR021109 -
Gso10g0549 499 PANTHER ASPARTYL PROTEASES 7 452 IPR001461 GO:0004190|GO:0006508
Gso10g0549 499 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Gso10g0549 499 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Gso10g0549 499 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Gso10g0549 499 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0549 Gso-Chr10 6142677 6149696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0549 58 433 Miscellaneous Gene Families AT1G44130 29.177 3.28e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0549 - - gmx:100798300 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1562 19 44568845 44574516 Gso10g0549 10 6142677 6149696 PCT
Gso3g1581 3 41756840 41762658 Gso10g0549 10 6142677 6149696 PCT
Gso10g0549 10 6142677 6149696 Gso19g1562 19 44568845 44574516 PCT
Gso10g0549 10 6142677 6149696 Gso3g1581 3 41756840 41762658 PCT