Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1407 ATGGAGGACGGGGGTAGTGTCAAAGCAGGTAGTACTACTAATACTATGAGTAGTTTCAGGATTGGGAGTAGATCAGTTTGGAGCAACAGTGGTGTGGAAATCTTTGCCAACTCTTTCCACCAGGAAGATGATGAAGAGGCTCTTAAATGGGCTGCCATTCAGAAACTTCCTACTTTCGCACGTTTGAGGACGGGATTGATGACTTCACCTGAAGGGGTTGCCAATGAGGTCAATGTTCATCAACTTGGGTTGCAAGAAAGGAGAGGTTTGCTTGAGAGGCTGGTCAGAGTTGCCGAAGAGGACAATGAGAAGTTCATGCTCAAGCTCAGGGACCGCATTGATAGAGTTGGAATCACCATTCCTACAATAGAGGTCCGATTTGAGAACATGAACATTGGAGCAGAAGTTCATGTAGGTAGTAGAGCTTTGCCCACTTTCACTAACTACATGGTTAATAAAGTGGAGGGGCTATTGAACTTCCTTCATGTACTCCCAAGTAGAAAACAACGTATAAACATTCTCCAGAATGTTAGTGGAATCATAAGGCCTGCCAGAATGACATTGCTTTTGGGTCCTCCAAGTTCTGGGAAGACCACACTCCTGTTGGCTCTGGCTGGAAGACTTGATTCAAAATTAAAGTTCACTGGAAAGGTGACTTATAATGGTCATGGGATGAATGAGTTTGTACCCCAACGAACTGCTGCTTATGTCAGTCAAAATGATCTTCATATTGGAGAAATGACAGTTAGAGAAACCTTGGCCTTCTCCGCACGGGTCCAAGGAGTTGGAGCTCGTTATGATTTGCTAGCAGAGGTGTCCAGAAGAGAGAAAGAAGCAAATATTAAACCTGACCCAGATATAGATGTCTATATGAAGGCTGTAGCAACTGAAGGCCAGAAAGCAAATTTTATCACAGATTATATTCTAAGGATTTTGGGATTGGAGGTTTGTGCTGATACTATTGTGGGAAATGCAATGTTAAGAGGTATATCTGGTGGACAAAGAAAACGTGTTACAACAGGGGAGATGCTGGTTGGACCAGCTAAAGCTGTATTCATGGATGAAATATCCACTGGTTTGGATAGTTCAACAACTTTTCAAGTTGTGAATTCACTCAAGCACTTTATCCACTCTCTCAAAGGAACTGCTGTCGTCTCACTCCTACAACCAGCACCAGAGACCTACAATCTTTTTGATGACATTATTCTACTCTCTGATGGCCAAATTGTGTATCAGGGTCCCCGCGAACATGTTCTTGAATTCTTTGCTTCTGTGGGTTTCAAATGTCCCGAGAGGAAAGGTGTTGCAGACTTTCTGCAAGAAGTGACGTCAAGGAAAGATCAGGAACAATATTGGGTACACAGAGATCAGCCTTACAGATTTGTCACAACCGAAGAGTTTGTAGAGGCATTTCAATCATTTCATGTTGGGAGAAGCCTTGCTGATGAACTTGCTACTCAATTTGACAAGTCTAAAAGCCACCCTGCAGCTTTGGCAACCAAAATGTATGGATTAGGAAAATGGGAACTGTTGAAGGCTTGCTTGTCAAGAGAATATTTACTCATGAAGCGTAATTCATTTGTCCACATCTTCCAACTTTGCCAACTTGCTATAGTGGCCTTTATAGCCATGACCGTTTTCTTCCGGACTGAGATGCACCCAGATTCTGTGACCAGTGGTGGTATATATGCGGGTGCATTGTTCTATGGCCTTCTTGTAATTTTGTTGGATGGATTTGCTGACCTTACCATGACAGTTTCGAAGCTTCCTGTTTTTTACAAGCAAAGGGACTTTCTCTTCTTCCCTTCATGGGTATATGCTCTTCCTGCATGGATCCTAAAAATCCCCATGACTTTTGCGCAAGTGGGAATCTGGGTGTTCCTCACCTACTATGTTATTGGTTTTGATCCATATGTTGGAAGATTCTTCAGGCAATTCCTTCTTCTGTTATTTGTTAACCAGATGGCTTCTGCCTTATTCCGGTTTATTGGAGCACTTGGTAGGGAACTGACGGTTGCTTTCACAATTGGGTCATTTGTATTGGCCATCCTTATTGCCATGAGTGGTTTCATCCTGTCAAAAGGCAATATGAAAAAATGGTGGTTATGGGGCTTTTGGTCATCACCTATGATGTATGGACTGAATGCCATGATAAACAATGAATTCCAAGGGAAGAGATGGAGACATGTTCTACCCAACTCAACTACACCGCTAGGAGTTCAAGTTCTAAAATCTCGTGGGTTCTTCACCCAGTCAAAGTGGTATTGGATAGGTGTTGGGGCACTGATTGGATATACGATAGTGTTCAATATTGCTTACATCCTTGCTCTCACTTATTTGAACCCAATTGTGCAGCATCAAGCTGTTAAATCAGAGAAATCTCAAAGCAATGAGCAGGATGGTGGAAGCACTTCTGCTAGGTCTTCATCCAGAAGGAAAGAAGCTGACAGAAGAAGAGGAATGGCTCTTCCCTTTGAACCACATTCCATCACCTTCGATGATGTAACATATTCTGTTGACATGCCACAGGAAATGAAGAATCAGGGAGTTCTCGAGGATAGGTTGAACCTTTTGAAGGGTGTCAGTGGCACTTTTAGGCCTGGTGTTCTCACAGCTCTAATGGGTTCCACTGGTGCTGGCAAAACAACTCTGATGGATGTACTAGCTGGAAGAAAGACTGGGGGATATATTGGTGGGAACATCACAATTTCTGGCTATCCAAAGAAGCAAGAAACCTTTGCAAGAATTTCTGGATACTGTGAACAGAATGATATCCACTCTCCTTATGTTACAGTATATGAATCCTTGCTCTATTCAGCATGGCTTCGATTATCAGCAGAAATCAATTCTGAGACCAGGAAGATGTTCATTGAGGAAGTCATTGAACTTGTGGAGCTGAACCCTCTAAAGCATACAATTGTTGGATTGCCAGGTGTTAACGGACTATCTACAGAGCAGCGCAAAAGGTTGACTATTTCTGTTGAGCTAGTGGCTAATCCTTCTATCATATTCATGGATGAGCCAACTTCTGGGCTAGATGCAAGAGCTGCTGCTGTTGTTATGAGGGCTATTAGGAAAATAGTGGACACTGGAAGAACAGTTGTCTGCACCATCCATCAGCCTAGCATTGATATATTTGAATCTTTTGACGAGCTTTTTCTAATGAAACGAGGAGGACAAGAGATATATGTGGGGCCACTTGGACATCATTCTTATCATTTAATCAGTTACTTTGAGGGAATTAAAGGTGTCCGTACAATTGAGGATGGCTACAATCCAGCAACCTGGATGTTGGAAGTCACAACTTCAGCAAAAGAAATGGAATTGGGGATTGATTTCGCTGAGCTGTATAAAAATTCAGACTTATACAGGAGAAACAAGGAACTTATTGAAGAATTGAGTACTCCAGCCCCGGGTTCAAAGGACCTTTATTTTTCTTCAAAGTACTCTAGGTCCTTTATTACCCAATGCATGGCTTGCTTATGGAAACAACATTGGTCTTACTGGCGCAATAATGAATACACCGCCCTAAGATTTCTCTTTACAATTGCTGTTGCCTTGTTGTTTGGGAGCATATATTGGAACCTTGGCTCCAAAATCAAAAAGCAACAAGATCTTTTCAATGCCATGGGATCCATGTATGCTGCTGTTCTTCTTCTTGGTATTAAGAATTCTAATTCAGCACAACCGTTGGTGGCAGTTGAAAGAACAGTGTTTTATAGGGAAAAAGCTGCTGGAATGTATTCAGCTTTGGCATATGCTTTTGCTCAGGTTGTAGTCGAACTACCTCATGTTCTTCTACAAACTGTGGTCTATAGTGCTATAGTGTACGCAATGATTGGTTTTGAGTGGTCTGTCACTAAATTTTTCTGGTATCTCTTCTTCATGTACTTCACCTTCCTCTACTTTACCTATTATGGCATGATGTCTGCTGCCATGACCCCAAACCCATCCTTAGCGGTTATAATTTCTTCTGGATTCTATGAAGTATGGAATCTCTTCTCAGGGTTCATAATCCCACGACCAAGGATGCCTGTCTGGTGGAGATGGTATTATTGGGCAAATCCAGTAGCTTGGACTTTGTATGGGCTGGTGACATCACAGTTTGGAGATATACAAGACCATATTGAGTTTAATGGTAGAAGTACGACAGTTGAAGACTTTTTGAGAAATTACTTTGGTTTTAAGCATGATTTTTTGGGAGTAGTTGCAGCTGTACTTATAGGATTTGCAGTAACTTTTGCATTGATCTTTGCCATTGCCATAAAGATGTTAAATTTCCAAAGACGTTAA 4293 0.4191 MEDGGSVKAGSTTNTMSSFRIGSRSVWSNSGVEIFANSFHQEDDEEALKWAAIQKLPTFARLRTGLMTSPEGVANEVNVHQLGLQERRGLLERLVRVAEEDNEKFMLKLRDRIDRVGITIPTIEVRFENMNIGAEVHVGSRALPTFTNYMVNKVEGLLNFLHVLPSRKQRINILQNVSGIIRPARMTLLLGPPSSGKTTLLLALAGRLDSKLKFTGKVTYNGHGMNEFVPQRTAAYVSQNDLHIGEMTVRETLAFSARVQGVGARYDLLAEVSRREKEANIKPDPDIDVYMKAVATEGQKANFITDYILRILGLEVCADTIVGNAMLRGISGGQRKRVTTGEMLVGPAKAVFMDEISTGLDSSTTFQVVNSLKHFIHSLKGTAVVSLLQPAPETYNLFDDIILLSDGQIVYQGPREHVLEFFASVGFKCPERKGVADFLQEVTSRKDQEQYWVHRDQPYRFVTTEEFVEAFQSFHVGRSLADELATQFDKSKSHPAALATKMYGLGKWELLKACLSREYLLMKRNSFVHIFQLCQLAIVAFIAMTVFFRTEMHPDSVTSGGIYAGALFYGLLVILLDGFADLTMTVSKLPVFYKQRDFLFFPSWVYALPAWILKIPMTFAQVGIWVFLTYYVIGFDPYVGRFFRQFLLLLFVNQMASALFRFIGALGRELTVAFTIGSFVLAILIAMSGFILSKGNMKKWWLWGFWSSPMMYGLNAMINNEFQGKRWRHVLPNSTTPLGVQVLKSRGFFTQSKWYWIGVGALIGYTIVFNIAYILALTYLNPIVQHQAVKSEKSQSNEQDGGSTSARSSSRRKEADRRRGMALPFEPHSITFDDVTYSVDMPQEMKNQGVLEDRLNLLKGVSGTFRPGVLTALMGSTGAGKTTLMDVLAGRKTGGYIGGNITISGYPKKQETFARISGYCEQNDIHSPYVTVYESLLYSAWLRLSAEINSETRKMFIEEVIELVELNPLKHTIVGLPGVNGLSTEQRKRLTISVELVANPSIIFMDEPTSGLDARAAAVVMRAIRKIVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGHHSYHLISYFEGIKGVRTIEDGYNPATWMLEVTTSAKEMELGIDFAELYKNSDLYRRNKELIEELSTPAPGSKDLYFSSKYSRSFITQCMACLWKQHWSYWRNNEYTALRFLFTIAVALLFGSIYWNLGSKIKKQQDLFNAMGSMYAAVLLLGIKNSNSAQPLVAVERTVFYREKAAGMYSALAYAFAQVVVELPHVLLQTVVYSAIVYAMIGFEWSVTKFFWYLFFMYFTFLYFTYYGMMSAAMTPNPSLAVIISSGFYEVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVTSQFGDIQDHIEFNGRSTTVEDFLRNYFGFKHDFLGVVAAVLIGFAVTFALIFAIAIKMLNFQRR* 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1407 1430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 430 IPR027417 -
Gso19g1407 1430 Pfam ABC transporter 858 1010 IPR003439 GO:0005524
Gso19g1407 1430 Pfam ABC transporter 174 356 IPR003439 GO:0005524
Gso19g1407 1430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1066 IPR027417 -
Gso19g1407 1430 CDD ABCG_PDR_domain2 827 1065 IPR034003 -
Gso19g1407 1430 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 830 1082 IPR003439 GO:0005524
Gso19g1407 1430 Pfam Plant PDR ABC transporter associated 727 789 IPR013581 -
Gso19g1407 1430 PANTHER ATP-BINDING CASSETTE TRANSPORTER 18 1430 - -
Gso19g1407 1430 SMART AAA_5 867 1059 IPR003593 -
Gso19g1407 1430 SMART AAA_5 183 415 IPR003593 -
Gso19g1407 1430 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 158 431 IPR003439 GO:0005524
Gso19g1407 1430 Pfam ABC-transporter N-terminal 98 148 IPR029481 -
Gso19g1407 1430 Gene3D - 830 1071 IPR027417 -
Gso19g1407 1430 MobiDBLite consensus disorder prediction 791 820 - -
Gso19g1407 1430 Gene3D - 161 467 IPR027417 -
Gso19g1407 1430 Pfam ABC-2 type transporter 389 443 IPR043926 GO:0140359
Gso19g1407 1430 MobiDBLite consensus disorder prediction 791 806 - -
Gso19g1407 1430 CDD ABCG_PDR_domain1 165 413 IPR034001 -
Gso19g1407 1430 Pfam ABC-2 type transporter 1155 1369 IPR013525 GO:0016020|GO:0140359
Gso19g1407 1430 Pfam ABC-2 type transporter 510 722 IPR013525 GO:0016020|GO:0140359
Gso19g1407 1430 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 18 1430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1407 Gso-Chr19 42925557 42933515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1407 855 1081 Calmodulin-binding Proteins AT2G36910 24.242 5.05e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1407 K08711 - gmx:100813417 2782.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1407 19 42925557 42933515 Gso3g1414 3 40084269 40092052 GST