Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1400 ATGATGCTAAGAAGCTCTTCAACACCAGTTCTTGGATCCCTCCTCTCATCCTTCCCAGATAGTCCTAACAACAATATTCACTCAGAAACCTGTCATGCACTTAAACACTTTCCACCAACCAGTGTCCCACAACCTTATCACAAACTTACTTGCCACCAAACCCGGTCCTTTGCATGTGGTTCTTCTCCAATCTCTCCCTCAATTGGTGAGCTTGAAAGGCAAAACAAAGGCTTTAGAAGAGTCCAATCTGATGGGAACTTGCAAGACTTGGCCTACTTTTCTTGCAACAATGAAGAAAGGTTGGAGTATTTAGACCCTTCCAAGAGGTTTTCAGCTAGACACAGGAGCTTGGTGCTGGAGACAATTCCTTCTTACTCTACTGCTAAGCACAATGGCTTGAGTGAAGAAGAGGAAGATGAAGAAATGGAAAGTGAGAGTGAAGATGGGTTCAGTGTGGTGAATGGTGGAAAGGATGTGATATTCAGTGAAGAGGTGAGAGTGAAGAATGGAGTTTGTAGGGTGAGTTTTGGTGACCAGGAAGAGGTTGGTAGTGGTAAAGAAATGTATCTTGCAAAGGGACTTGGTGTGGAGTGTTGTGGCGATGGCATAGGTGGTTGTAGAGGCGGCGGTGGTGGTGATCATAATCCCTTGGGTTCTGGAGGAAATGATGGAGATAGGCATGCAGTGGAAGAATATTACAAGAAAATGGTTAAGGAAAATCCTGGGGATCCATTGTTTCTGAGGAATTATGCTAATTTTTTGTATCAGTACAAACAAGACTGTGAAGGAGCAGAGGAGTATTATTCCCGCGCCATACTTGCAGACCCGGATGACGGAGAAGTTCTATCACAGTATGGGAAGTTAGTTTGGGAGCTACATCATGACCAAGAACGTGCCTCCAGCTATTTTGAAAGAGCAGTCCAAGCCTCTCCTGAAGACAGCCATGTACAAGCAGCATATGCTAGTTTCCTTTGGGACACGGAGGAAGACGAGGATGGTAGCAACGAACCACAATGTTTGCCGCCACATTCTCTTCAAGGAGCTATAGCTACTGCAGGTGCTTGA 1065 0.4526 MMLRSSSTPVLGSLLSSFPDSPNNNIHSETCHALKHFPPTSVPQPYHKLTCHQTRSFACGSSPISPSIGELERQNKGFRRVQSDGNLQDLAYFSCNNEERLEYLDPSKRFSARHRSLVLETIPSYSTAKHNGLSEEEEDEEMESESEDGFSVVNGGKDVIFSEEVRVKNGVCRVSFGDQEEVGSGKEMYLAKGLGVECCGDGIGGCRGGGGGDHNPLGSGGNDGDRHAVEEYYKKMVKENPGDPLFLRNYANFLYQYKQDCEGAEEYYSRAILADPDDGEVLSQYGKLVWELHHDQERASSYFERAVQASPEDSHVQAAYASFLWDTEEDEDGSNEPQCLPPHSLQGAIATAGA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1400 354 SMART hat_new_1 294 326 IPR003107 GO:0006396
Gso19g1400 354 SMART hat_new_1 224 256 IPR003107 GO:0006396
Gso19g1400 354 SMART hat_new_1 259 291 IPR003107 GO:0006396
Gso19g1400 354 MobiDBLite consensus disorder prediction 127 150 - -
Gso19g1400 354 PANTHER OSJNBA0004N05.2 PROTEIN 1 338 - -
Gso19g1400 354 Gene3D Tetratricopeptide repeat domain 222 334 IPR011990 GO:0005515
Gso19g1400 354 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 338 - -
Gso19g1400 354 MobiDBLite consensus disorder prediction 328 354 - -
Gso19g1400 354 SUPERFAMILY TPR-like 227 332 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1400 Gso-Chr19 42828841 42831622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1400 - - gmx:100812713 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1400 19 42828841 42831622 Gso3g1407 3 40017693 40020273 GST