Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1370 ATGGAGCGGTTGAAGTGGGCTCAACTGGGGGAGAGGCTGAAGATGGGTGGGGCCCAGATGGGGCGAATGGTGAGCGGAAAAGTGAAGGAGATGCTTCAGGCGCCGACGCCGGAGTCGAAGATGGTGGACGAGGCCACGCTGGAGACAATGGAAGAACCTAATTGGGGCATGAATCTCAGAATCTGCAGCATGATCAACAGCGACCAATTCAACGGCTCCGAGGTCGTGAAGGCCATCAAGAGAAAGATCAACCACAAGAGCCCCGTGGTTCAGGCTCTCAGCCTCGACCTCCTCGAAGCCTGTGCCATGAATTGCGACAAGGTCTTCTCCGAAATCGCTTCCGAGAAGGTTCTCGATGAGATGATTCGCTTGATTGATAACCCGCAGGCCCAGCACCAGACTCGCAGTCGGGCTTTTCAGTTGATTCGGGCCTGGGGCGAGTCCGAGGATCTCGCATATCTCCCCGTCTTTCGTCAAACTTATATGTGTTTGAAAGGAAGGGATGAACCACTTGACATGGCAGGAGGAAATTCACCACCTGTTCCGTATGCCTCCGAGTCATATGCGCATCAATATCCTGTAGATCCCCCTGAAAGATACCCAATTCCCGAAGCTGAACTACACGATATTGATGATCCAGCAGCTTTCTCTTCTAATTACCAACACACATCAGTTGAGGAGAGGAAAGAGAATCTCGTGGTTGCTCGAAACAGTCTTGAATTGCTCTCAAGCATATTGAATTCTGAGGCAGAGCCAAAACCTTTGAAGGAAGATTTAACTATGAGCTTGTTGGATAAGTGCAAGCAATCACTCTCTATCATCAAGGGGATTGCGGAAAGCACTACAAACGATGAAGCGACACTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAGCAGGTAGTTTCTAAATATGAGGAGTTAGAAGCTGCTCAAAGTTATGGGGCACAACAACCTCAAAATGCTGACACTGACAAGCATGATGCCGAAGCTGTTCAAAATCCCAATGAAGTACCCAAAAGTGATGAATCTGAAGCTGCTCAGAATCTGGATCGAAAGCTTCCTCAAAAGTCTAACACTCTTAAAGTCAATGCAACTGGGGGCGAGGGGGATGGTCTTGCTGAAACTAAAATAGTGGATGATGGCACGAAGGAGAAGAATGCTGAATCTAGTTTCAAGCGAGATACCGAATGA 1194 0.4841 MERLKWAQLGERLKMGGAQMGRMVSGKVKEMLQAPTPESKMVDEATLETMEEPNWGMNLRICSMINSDQFNGSEVVKAIKRKINHKSPVVQALSLDLLEACAMNCDKVFSEIASEKVLDEMIRLIDNPQAQHQTRSRAFQLIRAWGESEDLAYLPVFRQTYMCLKGRDEPLDMAGGNSPPVPYASESYAHQYPVDPPERYPIPEAELHDIDDPAAFSSNYQHTSVEERKENLVVARNSLELLSSILNSEAEPKPLKEDLTMSLLDKCKQSLSIIKGIAESTTNDEATLFEALYLNDELQQVVSKYEELEAAQSYGAQQPQNADTDKHDAEAVQNPNEVPKSDESEAAQNLDRKLPQKSNTLKVNATGGEGDGLAETKIVDDGTKEKNAESSFKRDTE* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1370 397 ProSiteProfiles GAT domain profile. 223 310 IPR004152 GO:0035091|GO:0043130
Gso19g1370 397 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Gso19g1370 397 Gene3D - 28 181 IPR008942 -
Gso19g1370 397 SUPERFAMILY ENTH/VHS domain 34 167 IPR008942 -
Gso19g1370 397 SUPERFAMILY GAT-like domain 188 309 - -
Gso19g1370 397 PANTHER TOM1-LIKE PROTEIN 2 1 357 - -
Gso19g1370 397 MobiDBLite consensus disorder prediction 351 365 - -
Gso19g1370 397 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Gso19g1370 397 Pfam VHS domain 39 147 IPR002014 GO:0035091|GO:0043130
Gso19g1370 397 CDD VHS 39 165 - -
Gso19g1370 397 PANTHER TOM1-LIKE PROTEIN 1 1 357 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gso19g1370 397 MobiDBLite consensus disorder prediction 374 397 - -
Gso19g1370 397 Pfam GAT domain 236 309 IPR004152 GO:0035091|GO:0043130
Gso19g1370 397 Gene3D - 216 312 IPR038425 -
Gso19g1370 397 MobiDBLite consensus disorder prediction 312 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1370 Gso-Chr19 42487115 42489931 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1370 - - gmx:100803803 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1370 19 42487115 42489931 Gso3g1376 3 39682043 39684708 GST