Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1353 ATGAAGAAACAAGGGATGTATGAGCGCTATGCAGCTCTTTTTGCACTTCGTAATGACGGTGGAAATGATGCTGTTGCTGCTATTATTGATTCCTTGGGCTCAAAAAGTGCTCTACTGTGCCATGAGATGTGGAACCATGCTGCTTGCGTATTGAAGAAAGCCAATCAGATAAAATTAGTTGAAGATGTTGAAAACTTAGAGTCACTTCGTTGGGAAGATCAGCAGAAGATCAGAAAATACATAGAGAGTGGCGGCGGTGGCGGCAGCAGCAGTGGCGGGGGCAGCGCGGCAAAGTCAGACTCCAAGACTGTCAAAGATACTAAATGTGGTATTGAAGTTTCACAAAATTCTCGTGCCACATGCAAGGATTGCGGTCAAAAAATTATCAAAGGAGAGGTTCGTATATCTACTAAGCAAGGTGGTCAAGGTGCTAAAGGTTTGGCTTGGCACCATGCCAAGTGTCTCATCGATCTGTCACCATCAATTGAAGTGGATAAGTTATCTGGATGGAACAATCTCTCATCTTCTGATCAATCAGCTGTCATTGACTTCGCTAAAAAGGGTGGTAGTGATACAAAAATTGAGACTGAGGAGGGTAAAGAATCCACACCACAACAAACTTCCAAAGGTGGCATAAAACGGGGGAAGGATGTTGATAGTGAGCGGAAATCAAAAGTTGCTAAGGCCAAGGGAGATGTGTCTGTGGGCAGCGCAATGTCAGTGAAATCAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAGACCCAAAGCAAAGAACTCTGGGATTTGAAGGACGATCTCAAAAAGCACGTTACAACAACAGAGTTGCGTGAAATGTTGGAAGCCAGTGGTCAAGATTCAACAGGATCAGAACTTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGATCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGGTGCCATGGATACATTTCCGAGTGGAGTAAATGTTCTTACTCTACCTGTGAACCAAAACGTATTGAAGGGAAGTGGAAAATCCCAAAAGAAACAAATAATCAGTACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGGAAATCTGCTGAAAGTCAAATGATTGCTAGTCAGCATCAATCATCAAATAGTGGAAATTTACGAGATTTGAAAGTTGCTATCTGTGGATTACCTAATGACTCTATTGCGGAATGGAAATGCAAAATTGATGGCATATGTGGGATGTTTCATGCAAAAGTAAATAAAGATACTAACTGCTTGGTGGTTGGTGGATCACTCAATTATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGATTGACTGCTTAGCAAGAAAGAAAAGGCTTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACATAGTGCTGTTCACGAGGCTTCTGGCCTACAGGATTCCGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGATTGCTATGTGTTTCGTAAATGGGGCCGAGTTGGAAATGACAAGATTGGAGGAACAAAGCTGGAGGAAATGTCAAAATCTGATGCAGTATGTGAATTCAAACGATTATTCTATGAGAAGACTGGAAACCCTTGGGACGCATGGGAACAAAAGACTATCCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGACTATGGAGTTAACAAACAGGTCTCAAAAAAGGAAAAAAATGATGTCGACAGCAAACTACCTCCTCCATTAATAGAATTGATGAAGATGCTCTTTAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGGGGTTTGAAGCATTGACAGAGATACAAAATCTGTTAAAAATTAGCAATCCCGATCCATCAGTCAAGGAAAGCTTACTTATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTGTTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATTGCCTCAAGATTAGTTGGATTTGATGCCAACAATGATGATTCCATTGATGATAATTATAAGAAGCTTCACTGTGATATATCTCCACTTCCTCATGATAGTGAAGAGTTTTGTTTAATTGAGAAGTTTCTCCATAATACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCACTTGGAAATGTCTATGAGCTCAAGAAAGCGAAGTATATGGATAAACCTCCTGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAGGAATCAGAATATGTAAAGTGGAGGGGCAATGTCACTGTTCCTTGTGGCAAACCAGTTCCATCAAATGTCAAGAGTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA 2967 0.4115 MKKQGMYERYAALFALRNDGGNDAVAAIIDSLGSKSALLCHEMWNHAACVLKKANQIKLVEDVENLESLRWEDQQKIRKYIESGGGGGSSSGGGSAAKSDSKTVKDTKCGIEVSQNSRATCKDCGQKIIKGEVRISTKQGGQGAKGLAWHHAKCLIDLSPSIEVDKLSGWNNLSSSDQSAVIDFAKKGGSDTKIETEEGKESTPQQTSKGGIKRGKDVDSERKSKVAKAKGDVSVGSAMSVKSGEACDLEKKMETQSKELWDLKDDLKKHVTTTELREMLEASGQDSTGSELDLRDRCADGMMFGALDLCPICSGFLRYSGGMYRCHGYISEWSKCSYSTCEPKRIEGKWKIPKETNNQYLKKWFKSQKGKKPVRILPLPSPRKSAESQMIASQHQSSNSGNLRDLKVAICGLPNDSIAEWKCKIDGICGMFHAKVNKDTNCLVVGGSLNYEAEMRKARRMKIPIVREDYLIDCLARKKRLPFDMYKVEMIGEASSMVTIKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNDKIGGTKLEEMSKSDAVCEFKRLFYEKTGNPWDAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKEKNDVDSKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLLKISNPDPSVKESLLINASNRFFTMIPSVHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNDDSIDDNYKKLHCDISPLPHDSEEFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYVKWRGNVTVPCGKPVPSNVKSSELMYNEYIVYNTAQVKMQFLLKVRFHHKR* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1353 988 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 43 982 - -
Gso19g1353 988 SUPERFAMILY WGR domain-like 496 621 IPR036930 -
Gso19g1353 988 CDD parp_like 639 983 - -
Gso19g1353 988 SUPERFAMILY BRCT domain 400 488 IPR036420 -
Gso19g1353 988 PANTHER DNA LIGASE 43 982 - -
Gso19g1353 988 Gene3D - 306 366 IPR038650 -
Gso19g1353 988 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 44 85 IPR001510 GO:0003677|GO:0008270
Gso19g1353 988 ProSiteProfiles SAP motif profile. 268 302 IPR003034 -
Gso19g1353 988 SMART BRCT_7 400 478 IPR001357 -
Gso19g1353 988 Gene3D - 628 772 IPR036616 GO:0003950
Gso19g1353 988 SMART WGR_cls 528 611 IPR008893 -
Gso19g1353 988 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 639 773 IPR036616 GO:0003950
Gso19g1353 988 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 112 183 IPR001510 GO:0003677|GO:0008270
Gso19g1353 988 SUPERFAMILY ADP-ribosylation 772 987 - -
Gso19g1353 988 Gene3D - 236 305 - -
Gso19g1353 988 ProSiteProfiles PARP alpha-helical domain profile. 638 756 IPR004102 GO:0003950
Gso19g1353 988 SMART PADR1_2 294 347 IPR012982 -
Gso19g1353 988 MobiDBLite consensus disorder prediction 82 101 - -
Gso19g1353 988 MobiDBLite consensus disorder prediction 190 229 - -
Gso19g1353 988 Pfam PADR1 (NUC008) domain 296 345 IPR012982 -
Gso19g1353 988 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 194 - -
Gso19g1353 988 CDD WGR_PARP1_like 518 623 - -
Gso19g1353 988 SMART zf_PARP_3 112 186 IPR001510 GO:0003677|GO:0008270
Gso19g1353 988 SMART zf_PARP_3 25 82 IPR001510 GO:0003677|GO:0008270
Gso19g1353 988 PIRSF NAD_ADPRT 37 988 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Gso19g1353 988 Pfam BRCA1 C Terminus (BRCT) domain 402 475 IPR001357 -
Gso19g1353 988 ProSiteProfiles PARP catalytic domain profile. 763 988 IPR012317 GO:0003950
Gso19g1353 988 Gene3D BRCT domain 393 495 IPR036420 -
Gso19g1353 988 MobiDBLite consensus disorder prediction 212 229 - -
Gso19g1353 988 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 109 181 IPR001510 GO:0003677|GO:0008270
Gso19g1353 988 Pfam Poly(ADP-ribose) polymerase, regulatory domain 639 769 IPR004102 GO:0003950
Gso19g1353 988 ProSiteProfiles WGR domain profile. 517 616 IPR008893 -
Gso19g1353 988 Gene3D - 102 208 IPR036957 GO:0003677|GO:0008270
Gso19g1353 988 Gene3D - 34 101 IPR036957 GO:0003677|GO:0008270
Gso19g1353 988 Gene3D - 773 988 - -
Gso19g1353 988 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 42 88 - -
Gso19g1353 988 Pfam WGR domain 528 606 IPR008893 -
Gso19g1353 988 Pfam Poly(ADP-ribose) polymerase catalytic domain 783 984 IPR012317 GO:0003950
Gso19g1353 988 ProSiteProfiles BRCT domain profile. 430 488 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1353 Gso-Chr19 42266519 42277315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1353 K24070 - gmx:100800968 1896.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1353 19 42266519 42277315 Gso3g1357 3 39480587 39489397 GST