Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1341 ATGCTTCCTTTGCCGTCTTCATTCACCAAACCAAACTCCCACACTTCACAATTCACAAATCACACTATGCAACATTTTCACCCGGAGCCCCACATCGCTCCCACCGTCTCTTCCGACGCTAAGCGTAGCGGCAAAAAGCGCGGCAGCTACAACTGCGGCCGCTGCGGCCTCCCTAAGAAGGGCCATGACTGCACCGGCAAGACCGCCCCCACTCCCACCTCCGCTTCTTCCGCCACCCCTTCCCACTCCTCTTTCTCCGCCGTTTCCGCTCCTTCCTCCGGCTCCGCCTCCCGCCGCCCGCTGTCTCACCTCCGCCGCGCTCTCTCCTTCGACGAGGACGAAGCCGGCAGGCTCGATCCGTCGGAGCCCGCCGATGTGTGGTCTGTAGAGGATGATCTGGATTCGTCTGGTTTGCCGGGGAATCTTCTATGGGAAGTGTTGAGGAGGCTGCCGCCGGCGGGGCTGTTAACGGCGGCGATGGTGAGCAGAGGTTGGAGGGAGATGACAAGGAGTTTGTGGAGAGCGGCGGAGGAGTTAAGGATTAGGGTTCCGGCGTGGGCTCAGGTGGGTTTTGTGTCGTCAATTTTGCAGAAGTGTCCGGGGATCGTGACACTCTCTCTTAAAATGGAAAGTGATGTGGATTCCACGATACTGGCTTGTATTGCGTTCTCGTGCCCTAATTTGGCATTCTTGGAGATCTCGGTCTCTGATCCTGCAGTTAATCGGATCAGCGGGGGTGAATTTGCTCGATTTGTTGCTGATAAAAAGAGCCTCAAAAGCCTCAAGATGGAAGGTTGTTCTAACCTTGGAGGTTTTGTTCTTTGTTCGTCTAGTCTTTCTACCCTTTGGCTGTCTGATTTATACTCTCTGTCTAAAATGGTCTTTAATTGTCCTCAGTTGAGAGAGGTTTCATTGGAGTTTGCTCACCAAGAAAGTGACAGTACTGATCTTACAACCATGGTTGAAGGTTTGGGAAGAAGTTGCCCGAGGTTGAAAAACATACATATATCTTCAATGCATCTTTCTCATGCTGCTGTGCTTGCTCTTACTGCTGCTCAGTTAAGGGGGCTGCGAATGCTTTCACTTGTTCTTGGATCCGAAGTTACCGATGCATCTGTTGCTGCAATTGCCTCAAGCTATCTAAATCTGGAATTGCTTGATCTCAGTGGATCCAGCATCAGTGACAGTGGCATTAGCATGATTTGCAATGTGTTCTCTGAAACATTGACAAGGCTCCTTCTCGCTCTTTGCCCCAATGTGACTTCAAGTGGCATTCAATTTGCTACGGCTCAATTGCCACATCTTGAACTTATGGACTGTGGCATGACCATATGTGAACCTAATTCCCACCATCCAACTGCTGATGAAAGTAACCGCAAATTACAGAAAACATTTGCTACTAATCTACACCTTACAAACCAAAAGCTAATAATCAAACATAGTTGTTTAAAGAAACTTAGTTTGTGGGGATGCTCAGGCTTGGATGCCTTGTATTTAAACTGCCCACAACTCAATGATCTTAATCTAAATTCTTGTAGAAATTTGCATCCAGAGAGACTGTTGCTTCAGTGCCCCAGTCTAGAAAATGTGTATGCATCTGGTTGTCAGGACATGTTAATTGGGGCTATCCAAAGTCAGGTTTGCAATGCTTTTACTGATATGGAAAACCCTTCACCTTGTAAGCGTTTACCTGATGGCTCCAAAAGGGTTCGGGTACCTCATTTAGTTAATACTGAGTCGCCTGAGGATGAGAAGAAGGGAAGGAGAAAGAAGAGACGGCTTTGTAACGTGGTTGTTGATTGA 1803 0.4847 MLPLPSSFTKPNSHTSQFTNHTMQHFHPEPHIAPTVSSDAKRSGKKRGSYNCGRCGLPKKGHDCTGKTAPTPTSASSATPSHSSFSAVSAPSSGSASRRPLSHLRRALSFDEDEAGRLDPSEPADVWSVEDDLDSSGLPGNLLWEVLRRLPPAGLLTAAMVSRGWREMTRSLWRAAEELRIRVPAWAQVGFVSSILQKCPGIVTLSLKMESDVDSTILACIAFSCPNLAFLEISVSDPAVNRISGGEFARFVADKKSLKSLKMEGCSNLGGFVLCSSSLSTLWLSDLYSLSKMVFNCPQLREVSLEFAHQESDSTDLTTMVEGLGRSCPRLKNIHISSMHLSHAAVLALTAAQLRGLRMLSLVLGSEVTDASVAAIASSYLNLELLDLSGSSISDSGISMICNVFSETLTRLLLALCPNVTSSGIQFATAQLPHLELMDCGMTICEPNSHHPTADESNRKLQKTFATNLHLTNQKLIIKHSCLKKLSLWGCSGLDALYLNCPQLNDLNLNSCRNLHPERLLLQCPSLENVYASGCQDMLIGAIQSQVCNAFTDMENPSPCKRLPDGSKRVRVPHLVNTESPEDEKKGRRKKRRLCNVVVD* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1341 600 Pfam F-box domain 136 171 IPR001810 GO:0005515
Gso19g1341 600 SMART LRR_CC_2 328 352 IPR006553 -
Gso19g1341 600 SMART LRR_CC_2 354 379 IPR006553 -
Gso19g1341 600 SMART LRR_CC_2 380 404 IPR006553 -
Gso19g1341 600 SMART LRR_CC_2 501 524 IPR006553 -
Gso19g1341 600 Gene3D Ribonuclease Inhibitor 130 311 IPR032675 -
Gso19g1341 600 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 27 599 - -
Gso19g1341 600 MobiDBLite consensus disorder prediction 559 589 - -
Gso19g1341 600 MobiDBLite consensus disorder prediction 1 24 - -
Gso19g1341 600 MobiDBLite consensus disorder prediction 1 100 - -
Gso19g1341 600 PANTHER F-BOX/LRR-REPEAT PROTEIN 17-LIKE ISOFORM X1 27 599 - -
Gso19g1341 600 Gene3D Ribonuclease Inhibitor 312 454 IPR032675 -
Gso19g1341 600 SUPERFAMILY RNI-like 193 539 - -
Gso19g1341 600 MobiDBLite consensus disorder prediction 67 99 - -
Gso19g1341 600 ProSiteProfiles F-box domain profile. 132 176 IPR001810 GO:0005515
Gso19g1341 600 MobiDBLite consensus disorder prediction 575 589 - -
Gso19g1341 600 SUPERFAMILY F-box domain 136 178 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1341 Gso-Chr19 42117896 42123587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1341 - - gmx:100792669 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1341 19 42117896 42123587 Gso3g1338 3 39280165 39287071 GST