Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1304 ATGGCTTCTCACTTCTCCACTCACTGCCACCTTCCCTCTTTCTCTTCTTCTAACCATTTCCCTTTTTCATCTTCTTCTTCTATCTCTCTTCACCACTTCTCCAAATCCTCTCTGGGTGCCGTGTTGTCCGAGACTAACGACAAACAAGAGATAAGATGCAGAGCAATATCCAAACCACGAACACAAGAATATTCAGACATATTTCAGGGTAGTCTAGCAACGTTAAAGTTTCGTGAGATTAATGTGGAAGATGACATAGAAGAGGAGCAAGACATCGGGAAGGTTTTTGTGGCAAATGAGATCAAGAAGAGAGTGGACACTATCAAATCAATATTGGGTTCCATGGAAGATGGAGAGATAACAGTATCTGCTTATGACACTGCTTGGGTTGCTCTGATAGAAGATGTTCATGGAAGTGGTGCTCCTCAATTTCCATCGAGTCTAGAATGGATAGCGAAAAATCAACACCCTGATGGTTCATGGGGTGATAAGGAATTATTCTCAGCCCATGATCGGATTATTAACACGTTGGCTTGTGTTATTGCATTAAAATCATGGCATATGCACCCTGAAAAGTGTGAGAAAGGAATGACATTTTTTAAGGAGAATCTTAACCAGCTTCAGAATGAGAATGTGGAGCATATGCCAATTGGGTTTGAAGTAGCTTTTCCATCACTTCTTGACATGGCTCGTGGCTTGAACATTGAAGTGCCGGACAATTCCCCAATCCTGAACAAAATCTTCGCAATGAGAAACGTAAAACTCACAAGAATACCAAAAGCGATGATGCATAAAGTGCCCACAAGTCTGCTTCATAGCTTGGAAGGGATGTCAGGCCTTGACTGGAAAGAGCTTCTAAAACTGCAGTCTCAAGACGGTTCCTTCTTGTTTTCTCCGTCCTCCACTGCCTTTGCTCTCATGCAAACTAAAGACCAAAATTGCCACAATTACTTGAATAAAGTGGTCAAGAGGTTCAATGGGGGAGTTCCGAACGTGTACCCAGTGGATTTGTTCGAACATATTTGGGTGGTTGATAGGCTTGAACGCCTCGGAATATCTCAGTATTTTCAGCAAGAGATCAAGGACTGTTTGAATTATGTTCACAGACAAAATTTCAGATATTGGACTGAAAAGGGTATTTGTTGGGCAAGAAATTCAAATGTTCAAGACATTGATGACACGGCAATGGGTTTCAGATTACTAAGATTACACGGCTATCAAGTTTCAGCCGATGTGTTCAAGAACTTTGAGAGAAATGGTGAATTTTTCTGCTTCACGGGGCAGACTACACAAGCCGTGACAGGAATGTTTAATCTATATAGGGCCACACAAGTAATGTTCCCGGGAGAGAAAATTCTTGAGCATGGGAAGCATTTCTCTGCCAAATTTTTGAGGGATAAGAGAGCAGCAAATGAGCTAGTAGATAAATGGATCATAATGAAGAACCTGGCAGAAGAGGTTGCGTACGCTTTGGACGTACCATGGTATGCAAGCCTACCTCGAGTGGAGACAAGATTCTACATTGATCAATACGGTGGTGAGAGTGACGTGTGGATAGGCAAAACCCTTTACAGGATGGCCTATGTGAACAACAATAACTATCTCGAGCTTGCTAAATTAGATTACAACAATTGCCAGACACTGCATCTAATAGAGTGGGGGAGAATTCAGAAGTGGTACTCAGAATCTAGGTTGGGAGAGTTTGGATTGAACAGAAGAACTCTTCTGTTGGCCTATTTTCTGGCAGCAGCAAGCATATTTGAGCCTGAAAAGTCTCATGTGAGACTAGCGTGGGCCAAAACCAGTGTCTTACTTGAGACCATAACATCCTATGTTAGTGATGCAGAAATGAGGAAAGATTTCATGAAAAAATTCAGTGACTGCATTAACAGGCGAGACTACTCCATGGGCTGGAGGTTGAACAGGAACAGAATAGGACATGGACTGGCTGAGGCTTTGGTTGCCACCATAGATCAAATCTCGTGGGATATACTCGTGTCTCACGGTCACGAAATTGGATATCACATGCATCGCAGTTGGGAAAAGTGGCTTTCAAGTTGGCATCGCGAAGGAGACAAATGTGAAGGACAAGCTGAGCTTTTGGCGCAGATAATAAACCTATGTGACGGGCATTGGATTTCCGAGGATCAAGTGTTCGATCCACAATATCAGAGTCTCCTTCAACTCACTAACACACTCTGCAATAGACTCCGTTGCCACCAAAAGGACAAGGAACTCGAGAGCGGCAACTGCGGCACGAATGTAAACAGCATGATCACCCAAGAAGAAGAGTCAAAAATGCAAGAACTCGTGCAATTGGTGTACCAAAAATCTCCAACTGGCATTGATTTCAATATCAAGAATACTTTCCTCACAGTGGCCAAGAGTTTTTACTATACAGCTTTCTGTGATTCAAGGACCGTCAACTTCCATATTGCCAAAGTTCTGTTTGATAAAGTCGTTTAA 2466 0.4262 MASHFSTHCHLPSFSSSNHFPFSSSSSISLHHFSKSSLGAVLSETNDKQEIRCRAISKPRTQEYSDIFQGSLATLKFREINVEDDIEEEQDIGKVFVANEIKKRVDTIKSILGSMEDGEITVSAYDTAWVALIEDVHGSGAPQFPSSLEWIAKNQHPDGSWGDKELFSAHDRIINTLACVIALKSWHMHPEKCEKGMTFFKENLNQLQNENVEHMPIGFEVAFPSLLDMARGLNIEVPDNSPILNKIFAMRNVKLTRIPKAMMHKVPTSLLHSLEGMSGLDWKELLKLQSQDGSFLFSPSSTAFALMQTKDQNCHNYLNKVVKRFNGGVPNVYPVDLFEHIWVVDRLERLGISQYFQQEIKDCLNYVHRQNFRYWTEKGICWARNSNVQDIDDTAMGFRLLRLHGYQVSADVFKNFERNGEFFCFTGQTTQAVTGMFNLYRATQVMFPGEKILEHGKHFSAKFLRDKRAANELVDKWIIMKNLAEEVAYALDVPWYASLPRVETRFYIDQYGGESDVWIGKTLYRMAYVNNNNYLELAKLDYNNCQTLHLIEWGRIQKWYSESRLGEFGLNRRTLLLAYFLAAASIFEPEKSHVRLAWAKTSVLLETITSYVSDAEMRKDFMKKFSDCINRRDYSMGWRLNRNRIGHGLAEALVATIDQISWDILVSHGHEIGYHMHRSWEKWLSSWHREGDKCEGQAELLAQIINLCDGHWISEDQVFDPQYQSLLQLTNTLCNRLRCHQKDKELESGNCGTNVNSMITQEEESKMQELVQLVYQKSPTGIDFNIKNTFLTVAKSFYYTAFCDSRTVNFHIAKVLFDKVV* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1304 821 SFLD Terpene Cyclase Like 1 N-term 98 525 - -
Gso19g1304 821 Pfam Terpene synthase family, metal binding domain 535 694 IPR005630 GO:0000287|GO:0010333|GO:0016829
Gso19g1304 821 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 84 817 - -
Gso19g1304 821 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 292 516 IPR008930 -
Gso19g1304 821 Gene3D Farnesyl Diphosphate Synthase 545 821 IPR008949 -
Gso19g1304 821 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 84 817 - -
Gso19g1304 821 Gene3D - 124 336 - -
Gso19g1304 821 SUPERFAMILY Terpenoid synthases 530 802 IPR008949 -
Gso19g1304 821 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 98 525 - -
Gso19g1304 821 Gene3D - 107 543 IPR036965 GO:0010333|GO:0016829
Gso19g1304 821 Pfam Terpene synthase, N-terminal domain 281 491 IPR001906 GO:0010333|GO:0016829
Gso19g1304 821 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 124 307 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1304 Gso-Chr19 41682039 41693229 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1304 K04120 - gmx:100784193 1632.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1304 19 41682039 41693229 Gso3g1302 3 38851958 38862055 GST