Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1233 ATGGAGAAGATGGAGCATTTCAGCCACATCCACCCTCTTCTGTTAAAGCAGGAAGACAGCAATTACAACAACCAAGTCCTTTGCTCAGGTTGTGAAAAACTAATTTCAGGTCCTGTCTTCTGCTGCGTCCAATGCAACTACGTCCTTCACAAAAAGTGCGCACAAATTGCACGCCATGTGAAACACCCATTTCACCCTCAACACCCCCTTGTTCTCCTTTCCACCACCCCTTATGAAGGACCATACATATGTGATTCCTGTAGAGGCCTCTTCATTAACTTCGTATACCATTGTTATCATTGCAACTATGACCTTGATGTCTCATGTGGTTCTCAGTTTAACCCTGATGATGGCCACAAGCATGAGTTTTTGTCTGTGACAAATCCACAATCTTTTGTTTGTTATGCTTGTGGCATGCATGCAAACGAGGGTCTTGCTTGCTTATGCACCATTTGTCAGATTTGGGTTCATTCTAGCTGCGCTGAATTGCCTCTTGCTATTAGAATAAAAGGTCATGACCACCCTTTGAAGCTCACTTATACCCTTCATGTTTATGGTTTCTGGGGTAACTTAACTTGTGGTGTTTGTAATGAAGCAATGAGTCCAGCTTTTGCGGGTTACTTTTGCTCAACATGCAAATTTGCCGTGCATTTGAAGTGCCCGCAACAATATTTAAGAGGAGAGTACGAAGATGAGGAATCATTCACAGGCTATCAAACTGAGGAATCTCAAGATATTGATTTTACTTTTAGTTTCTTTGGTCATGAACATTTGTTGAAGTTCACGGAGGAAGAGAGTGATGATGATGTGAAATATTTTGATAAACTCTGTGATGCGTGTGTCCGACCCATCATGCCACCTTTCTTTTCCTGTGAAGAAGAAAATTGTGGCTTCTTTTTGCACCAAAGTTGTGCCGAATTACCAAGAACGAAGCAACACCCGTTTCACACGCACCCTCTAACTCTTCAATCCAAGGCTCCTTATGATGGCATTTACAAGTGCGACGGATGCAGAAGATTGAGCAATGGTTTTGTTTACCGTTGTGATGTGTGTCAATTCGACCTTGATGTTTGTTGTGGTACCCTTGAAGAGAGAATTGAACATGAAAGTCACGTGCATCCCTTGTTCCTCAAGAAGACAAGCGTTTCTAGGCAGTGCAAAGGTTGTCATCTTTGGTCGAAGCTTGTGTATGTGTGTGATGTTTGTGAGGATTTTTCTGTTGATTGTGGATGTGCTACTCTACCGAGTAAGACTTGGCACATGTATGACAAGCATCCTCTAAGTCTAAACTATTTCGTGGAAGGGAGTTTGAGGGAAAATGAATGTGGCATTTGCAATGAGAAAATGTCTCCGAAGCAATGGTTTTATTATTGTGATGATTGTGACTCTGGTGCTCACCCTTCTTGTGCTGTTGGCAAGTCTAGGCGTGTGAAGTTTGGAGGCAGTTTCAAATATGATGTTCACTCACACCCTCTTGCTTTGGTTGAAGAAACTGAGCAGAACAATGAATGCGGAGCCTGTGGTGAACGCTGCAATGGATGGACACTTGAATGTGGCCAATGCAAAGGCTACTTTCACCGGGAAGGACAGTGTTTTTGGAAAGAATTTAAAAAGAGTGCAAAGTATTTGGAGTTATCAGGAATGATGAGACACAGGTATGCAGCAAACGTGTTGGCCTCCACGCCCAATGCTACCACAAACTGA 1704 0.4284 MEKMEHFSHIHPLLLKQEDSNYNNQVLCSGCEKLISGPVFCCVQCNYVLHKKCAQIARHVKHPFHPQHPLVLLSTTPYEGPYICDSCRGLFINFVYHCYHCNYDLDVSCGSQFNPDDGHKHEFLSVTNPQSFVCYACGMHANEGLACLCTICQIWVHSSCAELPLAIRIKGHDHPLKLTYTLHVYGFWGNLTCGVCNEAMSPAFAGYFCSTCKFAVHLKCPQQYLRGEYEDEESFTGYQTEESQDIDFTFSFFGHEHLLKFTEEESDDDVKYFDKLCDACVRPIMPPFFSCEEENCGFFLHQSCAELPRTKQHPFHTHPLTLQSKAPYDGIYKCDGCRRLSNGFVYRCDVCQFDLDVCCGTLEERIEHESHVHPLFLKKTSVSRQCKGCHLWSKLVYVCDVCEDFSVDCGCATLPSKTWHMYDKHPLSLNYFVEGSLRENECGICNEKMSPKQWFYYCDDCDSGAHPSCAVGKSRRVKFGGSFKYDVHSHPLALVEETEQNNECGACGERCNGWTLECGQCKGYFHREGQCFWKEFKKSAKYLELSGMMRHRYAANVLASTPNATTN* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1233 567 ProSitePatterns Zinc finger PHD-type signature. 98 196 IPR019786 -
Gso19g1233 567 Pfam C1 domain 423 470 IPR004146 -
Gso19g1233 567 Pfam C1 domain 254 305 IPR004146 -
Gso19g1233 567 Pfam C1 domain 314 359 IPR004146 -
Gso19g1233 567 Pfam C1 domain 63 109 IPR004146 -
Gso19g1233 567 Pfam C1 domain 171 220 IPR004146 -
Gso19g1233 567 Pfam C1 domain 7 54 IPR004146 -
Gso19g1233 567 SUPERFAMILY Cysteine-rich domain 31 110 IPR046349 -
Gso19g1233 567 ProSitePatterns Zinc finger PHD-type signature. 28 101 IPR019786 -
Gso19g1233 567 SMART PHD_3 276 338 IPR001965 -
Gso19g1233 567 SMART PHD_3 27 88 IPR001965 -
Gso19g1233 567 SMART PHD_3 441 489 IPR001965 -
Gso19g1233 567 SMART PHD_3 133 213 IPR001965 -
Gso19g1233 567 SUPERFAMILY Cysteine-rich domain 392 474 IPR046349 -
Gso19g1233 567 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 8 531 - -
Gso19g1233 567 SUPERFAMILY Cysteine-rich domain 144 221 IPR046349 -
Gso19g1233 567 Gene3D - 182 226 - -
Gso19g1233 567 SUPERFAMILY Cysteine-rich domain 289 373 IPR046349 -
Gso19g1233 567 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 8 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1233 Gso-Chr19 40813407 40815954 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1233 - - gmx:121174110 1254.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1233 19 40813407 40815954 Gso3g1230 3 37940179 37942146 GST