Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1178 ATGGGAGAAGCACCAGCATTGCTTGTTGATGACGTGCAGGATGGGGCTCTGAATGGCCTTGAATTGAAAAATGGAACTTGCAAAACAACTGCTACTGTTGGCGATAAGATGTATGTCATTGGTGGAGCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACGGTAGTCTTGGAGAATGGGTTCGTCCCACTGTGCGTGGCACCAAACCCGTGTTGTGCAATGGCCTCTCAGCAGTGCCTTTGGAAGACCGAATACTGATTCTTAAGAAGGGTTCTAAGCCTGATGATCGGATATGGTTCCTGGAGATTGACACCCAATATGTTAGGCAGCAGCAAAAAATTTTGGGGACTGAGGTAGTTGCATGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACACTGATATCAATGCTTATGAAGGAATTTCCATCTATGTTTGGTTTTTCCGTGAGCCACACCACCCGTGCTCCAAGAGGTATCGAGAAAGATGGGGTTCATTACCATTTTACTGAGAAGAGTATAATGGAGAAAGAGATCAAAGAAGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGCAATCTGTATGGAACTAGTGTTGAGGCTGTCGAACTGGTAGCAGATGCAGGGAAAAGATGTATTCTTGATATTGACGTTCAAGGTGCAAGATCTGTGAGGGCTAGTACGCTTGAAGCTATATTCATCTTTATCTGCCCCCCATCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGGGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTACGAAATGCTGATGCTGAGATTGAGCAAGGGAAATCTTCTCAAATATTTGATTTCATCCTATACAATGACAATCTTGAGGAGTGTCATGAGAGACTTAAGAAACTATTGGGACTTGACGGTTTTGTCACTGCTCCACCTATATCAGGCCCTATAGAGATTGATTTACCAATGGATCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGGTCATTTTGGATGTTTCCTCACTAAAAGGGGGTGCACCTGGACGGACAAGAGGCCTAAATTTCCAAGCCATTGGCTCTTTCTCAAATGGCTTGAATGGGATAGATCAACTTAGCTAA 1200 0.4375 MGEAPALLVDDVQDGALNGLELKNGTCKTTATVGDKMYVIGGADDGTLSIEVQIFDGSLGEWVRPTVRGTKPVLCNGLSAVPLEDRILILKKGSKPDDRIWFLEIDTQYVRQQQKILGTEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGIEKDGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVELVADAGKRCILDIDVQGARSVRASTLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNADAEIEQGKSSQIFDFILYNDNLEECHERLKKLLGLDGFVTAPPISGPIEIDLPMDHSVSKIDNKIIINCISSGEKESKNLVILDVSSLKGGAPGRTRGLNFQAIGSFSNGLNGIDQLS* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1178 399 ProSiteProfiles Guanylate kinase-like domain profile. 133 315 IPR008144 -
Gso19g1178 399 SMART gk_7 132 318 IPR008145 -
Gso19g1178 399 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 325 - -
Gso19g1178 399 Gene3D - 129 317 IPR027417 -
Gso19g1178 399 PANTHER GUANYLATE KINASE-RELATED 1 325 - -
Gso19g1178 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 314 IPR027417 -
Gso19g1178 399 SUPERFAMILY Galactose oxidase, central domain 30 113 IPR011043 -
Gso19g1178 399 TIGRFAM guanyl_kin: guanylate kinase 134 314 IPR017665 GO:0004385|GO:0006163
Gso19g1178 399 ProSitePatterns Guanylate kinase-like signature. 168 185 IPR020590 -
Gso19g1178 399 Gene3D - 24 128 IPR015915 GO:0005515
Gso19g1178 399 CDD GMPK 135 311 - -
Gso19g1178 399 Pfam Guanylate kinase 133 314 IPR008145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1178 Gso-Chr19 40179776 40183772 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1178 K00942 - gmx:100527163 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1178 19 40179776 40183772 Gso3g1179 3 37344844 37348601 GST
Gso19g1178 19 40179776 40183772 Gso2g1550 2 33076676 33080165 PCT
Gso2g1550 2 33076676 33080165 Gso19g1178 19 40179776 40183772 PCT