Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1162 ATGTCTAGTGCTACAAAAGTGTTGGATCCAGCATTCCAGGGAGTTGGTCAAAAAGTAGGCACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGATCTGAATATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAGACAACACAAGGCAAAGGAGGTGCTTATTTGTATGACATTCACTTCTGGATTGGAAAGGATACAAGTCAGGATGAGGCTGGAACAGCAGCCATTAAAACTGTTGAACTCGATGCATCTCTTGGAGGACGTGCAGTGCAACACAGGGAAATTCAAGGGCATGAATCTGACAAATTTTTGTCCTACTTTAAGCCATGTATAATTCCATTAGAGGGGGGTATCGCATCTGGATTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTATATGTATGCAGAGGAAAAAGAGTTGTCAGAATAAAACAGGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGGAAAGAGCCAAGGCTCTGGAAGTTATACAGTTGTTGAAGGAAAAACATCATGAGGGAAAATGTGACGTTGCAATTGTTGATGATGGCAAGCTGGATACTGAGTCAGACTCAGGTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATTAGTGAGGATGATATCGTTCCAGAGACCATTCCTGCTCAACTCTATAGTATTGCTGATGGTGAGGTCAAGCCTGTGGAAGGTGAACTTTCAAAATCACTGCTGGAGAACTACAAATGCTATCTATTGGACTGTGGTACTGAGGTATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATCATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGCCATCAGGATCTGCTACTAACAGTGCTGACGAAGGAAGAGGAAAAGTTGCAGCTTTGCTGAAGCAGCAAGGTATGGGTGTGAAAGGGGTGACAAAAACTACCCCAGTTGTTGAGGACATTCCACCTCTGCTTGAAGGAGGTGGAAAGATGGAGGTATGGCAAATCAGTGGAAGTGCTAAGACTCCCTTATCTAAGGAGGATATTGGTAAATTTTATAGTGGAGATTGTTACATAGTACTGTACACTTATCACTCTAGCGAGAGAAAGGAAGACTACTACTTGTGTTGTTGGTTTGGAAAAGACAGCATTGAGGAGGACCAAAGAATGGCTATTCGATTGGCTAACTCAATGTTCAACTCATTAAAGGGTAGACCTGTTCAGGGTCGCATATTTGATGGTAAAGAGCCACCACAGTTTATTGCCCTTTTCCATCCAATGGTGGTCCTCAAGGGAGGCTTGAGCTCTGGTTACAAAAAATTTATAGCAGATAAAGGTTTGCCGGATGAGACATACGCAGCAGAGAGTGTTGCACTTATTCGGATTTCTGGAACATCCATTCATAATAATAAAGTGGTGCAAGTAGATGCAGTGGCAGCATTGCTGAACTCTACCGAGTGTTTTGTCCTGCAATCTGGCTCAGCTGTTTTTACATGGCATGGGAATCAATGTTCCCTTGAGCAGCAGCAGCTTGCAGCAAAAGTTGCTGAGTTTTTAAGGCCAGGAGTTTCTTTAAAGCTTGCTAAAGAAGGAACAGAAACCTCAACTTTCTGGTTTGCACTTGGAGGAAAACAAAGTTACACCAGCAAAAATGTCACTAATGACATTGTCAGAGACCCACATTTGTTCACTTTATCTTTTAATAGAGGAAAGTTACAGGTAGAGGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACAGAAGATATCCTGATCCTTGACACGCACACAGAAGTGTTTGTTTGGATTGGTCAGTGTGTGGACCCAAAAGAAAAGCAAAAAGCTTTTGAAATTGCCCAGAAATACATAGATAAGGCTGCATCTCTGGAAGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGGTGCCAGGGAACTCATTCCAGAAAAAGGTGACATTACTCTTTGGAACTGGCCATCCTGTAGAGGAAAAGTCTAATGGGTCAAGTCAAGGAGGGGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCCTTAAATAATGCATTCAATTCATCTCCTGAGACAACGTCCAGTGCGGATAAGTTGAATGGGTTAAATCGAGGTGGACCGAGACAAAGGGCAGAAGCCTTAGCAGCCTTAAACTCTGCATTTAATTCATCATCTGGAACCAAAGTTTATACTCCAAGGCCATCTGGAAGAGGTCAAGGATCACAAAGAGCAGCAGCAGTAGCTGCTCTCTCTTCAGTTCTTACTGCTGAAAAGAAGAAAACTTCACCTGAAACTTCTCCTGTGGCTAGCACTAGTCCTGTAGTGGAAAGTAGCAACTTTGACACTAAAAGTGAAAGTGCCCCTTCTGAAACGGAAGTTGTTGAAGAAGTTGCAGATGTCAAAGAGACAGAAGAAGTTGCCCCTGAAGCTGGTACCAATGGGGATTCAGAACAACCAAAACAAGAAAATGTGGAGGATGGAAGAAATGACAGTGAAAATAATAATCAAAATGTCTTCAGTTATGAGCAATTAAAGACTAAATCTGGTAGTGTTGTGTCTGGAATTGATCTTAAACAGAGAGAGGCTTATCTGTCAGACAAAGAGTTCGAAACTGTATTTGGAATGGCCAAAGAAGCATTCTCTAAGTTGCCAAGATGGAAGCAAGACATGCTGAAAAGGAAAGTGGATTTGTTCTAG 2955 0.4183 MSSATKVLDPAFQGVGQKVGTEIWRIEDFQPVPLPRSEYGKFYMGDSYIILQTTQGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDASLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGIASGFKKPEEEEFETRLYVCRGKRVVRIKQVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQLLKEKHHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVISEDDIVPETIPAQLYSIADGEVKPVEGELSKSLLENYKCYLLDCGTEVFVWVGRVTQVEDRKAACQAAEEFVASQKRPKSTRITRIIQGYETHSFKSNFDFWPSGSATNSADEGRGKVAALLKQQGMGVKGVTKTTPVVEDIPPLLEGGGKMEVWQISGSAKTPLSKEDIGKFYSGDCYIVLYTYHSSERKEDYYLCCWFGKDSIEEDQRMAIRLANSMFNSLKGRPVQGRIFDGKEPPQFIALFHPMVVLKGGLSSGYKKFIADKGLPDETYAAESVALIRISGTSIHNNKVVQVDAVAALLNSTECFVLQSGSAVFTWHGNQCSLEQQQLAAKVAEFLRPGVSLKLAKEGTETSTFWFALGGKQSYTSKNVTNDIVRDPHLFTLSFNRGKLQVEEVYNFSQDDLLTEDILILDTHTEVFVWIGQCVDPKEKQKAFEIAQKYIDKAASLEGLSPHVPLYKVTEGNEPCFFTTYFSWDHAKAMVPGNSFQKKVTLLFGTGHPVEEKSNGSSQGGGPRQRAEALAALNNAFNSSPETTSSADKLNGLNRGGPRQRAEALAALNSAFNSSSGTKVYTPRPSGRGQGSQRAAAVAALSSVLTAEKKKTSPETSPVASTSPVVESSNFDTKSESAPSETEVVEEVADVKETEEVAPEAGTNGDSEQPKQENVEDGRNDSENNNQNVFSYEQLKTKSGSVVSGIDLKQREAYLSDKEFETVFGMAKEAFSKLPRWKQDMLKRKVDLF* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1162 984 Pfam Villin headpiece domain 949 984 IPR003128 GO:0003779|GO:0007010
Gso19g1162 984 Gene3D Severin 247 359 IPR029006 -
Gso19g1162 984 SUPERFAMILY Actin depolymerizing proteins 596 718 - -
Gso19g1162 984 SMART VHP_1 949 984 IPR003128 GO:0003779|GO:0007010
Gso19g1162 984 MobiDBLite consensus disorder prediction 809 824 - -
Gso19g1162 984 MobiDBLite consensus disorder prediction 773 795 - -
Gso19g1162 984 CDD gelsolin_S2_like 139 232 - -
Gso19g1162 984 SUPERFAMILY Actin depolymerizing proteins 510 615 - -
Gso19g1162 984 SUPERFAMILY Actin depolymerizing proteins 383 528 - -
Gso19g1162 984 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Gso19g1162 984 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Gso19g1162 984 PRINTS Gelsolin family signature 437 455 IPR007122 GO:0051015
Gso19g1162 984 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Gso19g1162 984 PRINTS Gelsolin family signature 533 553 IPR007122 GO:0051015
Gso19g1162 984 PRINTS Gelsolin family signature 593 612 IPR007122 GO:0051015
Gso19g1162 984 PRINTS Gelsolin family signature 645 667 IPR007122 GO:0051015
Gso19g1162 984 PRINTS Gelsolin family signature 674 693 IPR007122 GO:0051015
Gso19g1162 984 Gene3D Severin 133 246 IPR029006 -
Gso19g1162 984 SUPERFAMILY Actin depolymerizing proteins 129 237 - -
Gso19g1162 984 SUPERFAMILY Actin depolymerizing proteins 223 346 - -
Gso19g1162 984 PANTHER VILLIN-3-LIKE ISOFORM X1 1 984 - -
Gso19g1162 984 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Gso19g1162 984 CDD gelsolin_S4_like 386 487 - -
Gso19g1162 984 Pfam Gelsolin repeat 532 583 IPR007123 -
Gso19g1162 984 Pfam Gelsolin repeat 264 337 IPR007123 -
Gso19g1162 984 Pfam Gelsolin repeat 638 713 IPR007123 -
Gso19g1162 984 Pfam Gelsolin repeat 409 484 IPR007123 -
Gso19g1162 984 Pfam Gelsolin repeat 29 111 IPR007123 -
Gso19g1162 984 Pfam Gelsolin repeat 150 217 IPR007123 -
Gso19g1162 984 Gene3D Villin headpiece domain 908 984 IPR036886 GO:0003779|GO:0007010
Gso19g1162 984 MobiDBLite consensus disorder prediction 742 761 - -
Gso19g1162 984 CDD gelsolin_S3_like 254 342 - -
Gso19g1162 984 Coils Coil 983 984 - -
Gso19g1162 984 Gene3D Severin 522 613 IPR029006 -
Gso19g1162 984 MobiDBLite consensus disorder prediction 809 924 - -
Gso19g1162 984 CDD gelsolin_S5_like 519 609 - -
Gso19g1162 984 MobiDBLite consensus disorder prediction 874 894 - -
Gso19g1162 984 ProSiteProfiles Headpiece (HP) domain profile. 919 984 IPR003128 GO:0003779|GO:0007010
Gso19g1162 984 SUPERFAMILY VHP, Villin headpiece domain 916 984 IPR036886 GO:0003779|GO:0007010
Gso19g1162 984 MobiDBLite consensus disorder prediction 841 873 - -
Gso19g1162 984 Gene3D Severin 615 734 IPR029006 -
Gso19g1162 984 PANTHER VILLIN 1 984 IPR007122 GO:0051015
Gso19g1162 984 CDD gelsolin_S6_like 622 720 - -
Gso19g1162 984 CDD gelsolin_S1_like 12 124 - -
Gso19g1162 984 SMART VILL_6 251 344 IPR007122 GO:0051015
Gso19g1162 984 SMART VILL_6 392 490 IPR007122 GO:0051015
Gso19g1162 984 SMART VILL_6 518 607 IPR007122 GO:0051015
Gso19g1162 984 SMART VILL_6 139 234 IPR007122 GO:0051015
Gso19g1162 984 SMART VILL_6 19 117 IPR007122 GO:0051015
Gso19g1162 984 SMART VILL_6 624 719 IPR007122 GO:0051015
Gso19g1162 984 Gene3D Severin 5 132 IPR029006 -
Gso19g1162 984 Gene3D Severin 389 521 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1162 Gso-Chr19 39902261 39915310 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1162 - - gmx:100787208 1905.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1162 19 39902261 39915310 Gso3g1164 3 37148350 37161548 GST
Gso19g1162 19 39902261 39915310 Gso2g1570 2 34200603 34215826 PCT
Gso2g1570 2 34200603 34215826 Gso19g1162 19 39902261 39915310 PCT