Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1100 ATGATACCTATGGATACTTTGCTCAAAACACCTAACAAGCTTGAGTTTTTGCACCCCCTTCACGGTTACTCTGAAAAATTTAGCAATTCATGTTCCTCTAGGGTACAAAATCAGGATTTTAGGTTTGGTTCCAAGAAACCAATTGTGAGGTGGGGTAAATGTGGTAATTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCTTCAAAGGGTGCTGTAGTGGACCTTGCTGTTGTGGGAGGAGGTCCTGCAGGGCTTGCTGTTGCACAGCAGGTTTCTGAGGCAGGGCTTTCAGTTTGTGCCATTGATCCAAACCCCAGGCTGATTTGGCCCAATAATTATGGGGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGATTGCCTTGACACTACTTGGTCCGGCGCGGTCGTCTTCATTGACGACAAAACAAAGAAGGATCTAGACAGGCCTTATGGTAGGGTCAACAGGAAGCTGCTGAAGTCCAAGATGCTGCAGAAATGCATATCAAATGGCGTCAAGTTTCACCAAGCAAAAGTTATCAAGGTTATTCACGAGGAGACCAAATCTTTGCTGATTTGTAATGATGGTGTCACTATTCAGGCCACTGTGGTTCTTGATGCAACTGGCTTTTCAAGATGCCTTGTTCAGTATGATAAACTGTATAATCCGGGGTACCAGGTTGCTTATGGGATTTTGGCCGAGGTTGATGAACACCCGTTTGATGTAGATAAAATGCTTTTCATGGATTGGAGAGATTCTCATCTGAACAATGACATGGAGCTGAAGCAGAGAAATTGTAGGATACCCACCTTTTTGTATGCCATGCCCTTTTCATCCACCAAGATATTTCTTGAAGAAACTTCTCTTGTGGCACGCCCTGGGTTACGAATGGATGATATACAAGAAAGAATGGTTGCAAGGTTGAAACACTTGGGTATTAGAGTGAAAAGCATCGAAGAAGATGAGCAGTGTGTCATTCCCATGGGTGGCCCCCTCCCAGTACTTCCCCAAAGAGTTGTAGGCATTGGCGGTACCGCAGGAATGGTGCATCCTTCGACAGGGTATATGGTAGCAAGGACCCTGGCTGCAGCTCCTATTGTTGCTAATTCTATTGTTCAGTGCCTTGGTTCTGATAGAGGTTTTTCAGGAGGCGAAACATCTGCACAAGTGTGGAAAGATTTGTGGCCTATCCAAAGGAGGCGACAAAGGGAGTTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTGGACTTACCAGGTACAAGGAGATTTTTTGATGCATTTTTTGATCTGGAACCTCATTACTGGCATGGATTCTTATCATCAAGACTGTTTCTTCCCGAGCTCATATTTTTTGGACTCTCTCTATTTTCTTATGCTTCTAATACATCTAGGATAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAACATGATCAACAACTTGGTAAAAGATACAGAATAA 1524 0.4364 MIPMDTLLKTPNKLEFLHPLHGYSEKFSNSCSSRVQNQDFRFGSKKPIVRWGKCGNLRASSSALLELVPEFKKENLDFELPLYDSSKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEETKSLLICNDGVTIQATVVLDATGFSRCLVQYDKLYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLNNDMELKQRNCRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQERMVARLKHLGIRVKSIEEDEQCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQCLGSDRGFSGGETSAQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELIFFGLSLFSYASNTSRIEIMAKGTLPLVNMINNLVKDTE* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1100 507 SUPERFAMILY FAD/NAD(P)-binding domain 91 475 IPR036188 -
Gso19g1100 507 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 9 507 - -
Gso19g1100 507 Gene3D - 89 438 IPR036188 -
Gso19g1100 507 Pfam Lycopene cyclase protein 92 484 - -
Gso19g1100 507 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 9 507 - -
Gso19g1100 507 TIGRFAM carotene-cycl: lycopene cyclase family protein 92 487 IPR010108 GO:0016117|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1100 Gso-Chr19 39107795 39109827 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1100 K06443 - gmx:100810895 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1100 19 39107795 39109827 Gso3g1105 3 36293188 36295172 GST