Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0784 ATGGTGTCGAAGGAAGCAATTGCCCAAACTGATCAGAACAAAAGTGAAAAAAGTGTCTATGATGTTCCCACCTCACATTCCAAACCGACGTCAATGGCAGCCTCATCCTCCTTCTCCACCCTCTTCTCCTTCCTCCTCCCTCCAAAGCCACACCCTCCTCCCATCATCACTCGCTTCCCACTCCAGAAGCTACGTGCCAAGCATCAGGACCAGGACCACCACTCGTCGGCGGAGCTGTCCGCCGTGGCGAACCCGTCCCACGCGCATGCGAACACGCTCTTCTTCCGGTCGGCGTACAACGTGCAGGTGGTGGTGGACGAGAACGAGCCGGAGGAGAGGCTCCTCAACCGGTTCCGGAGAGAGGTCATGAGAGCCGGAGTCATTCAGGAGTGCAAGCGGAGACGGTTCTTCGAGAACAAGCAGGAGGAAAAGAAGCGCAAGAACCGCGAAGCTGCCAAGCGTAAGAGCAGAAGCAGGCGCTCTCAATCGAGATTTCAACCACAAAACAAGCCGGATGTTGCAGCAACCAAGAAGGAAGAGGATGATGATAACTGGGATCTTCCAGAAGTAGACGCTCCATATATTTCAACCGCATGA 597 0.5477 MVSKEAIAQTDQNKSEKSVYDVPTSHSKPTSMAASSSFSTLFSFLLPPKPHPPPIITRFPLQKLRAKHQDQDHHSSAELSAVANPSHAHANTLFFRSAYNVQVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFENKQEEKKRKNREAAKRKSRSRRSQSRFQPQNKPDVAATKKEEDDDNWDLPEVDAPYISTA* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0784 198 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 45 194 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gso19g0784 198 Gene3D Ribosomal protein S8 115 153 IPR038380 -
Gso19g0784 198 TIGRFAM S21p: ribosomal protein bS21 101 157 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gso19g0784 198 MobiDBLite consensus disorder prediction 139 198 - -
Gso19g0784 198 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 45 194 - -
Gso19g0784 198 MobiDBLite consensus disorder prediction 1 33 - -
Gso19g0784 198 Pfam Ribosomal protein S21 102 155 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gso19g0784 198 Hamap 30S ribosomal protein S21 [rpsU]. 100 156 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gso19g0784 198 PRINTS Ribosomal protein S21 family signature 104 112 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gso19g0784 198 PRINTS Ribosomal protein S21 family signature 112 121 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gso19g0784 198 PRINTS Ribosomal protein S21 family signature 124 134 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gso19g0784 198 PRINTS Ribosomal protein S21 family signature 136 146 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0784 Gso-Chr19 31999616 32000864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0784 - - gmx:100780245 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0784 19 31999616 32000864 Gso5g0670 5 10028370 10032275 PCT
Gso5g0670 5 10028370 10032275 Gso19g0784 19 31999616 32000864 PCT