Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0771 ATGGGAGTGACACCGAAAATTGCTCCTTCGATGCTCTCTTCCGACTTCGCCAATTTGGCTTCCGAGGCTCAGCGCATGCTCCACTTCGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCATTTTGTCCCCAATTTAACTATTGGCGCTCCAGTTATTGAAAGTTTGAGAAAGCACACAAAGGGATATTTGGATTGTCACCTTATGGTTACAAATCCTCTTGATTATGTTGAGCCCTTGGCAAAAGCTGGTGCTTCTGGTTTTACATTTCATGTAGAGACATCAAAAGATAACTGGGAAGAACTTATCCAAAGAATCAAGTCACATGGCATGACTCCTGGTGTAGCATTAAAGCCTGGGACCCCCATTGAAGAGGTTTATCCTCTGGTGGAAGCCGGAAATCCTGTGGAAATGGTTCTTGTGATGACTGTAGAACCGGGATTCGGAGGACAAAAATTTATGCCAGAGATGATGGATAAAGTACGTATACTTAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGTTTAGGGCCTTCAACCATAGATGTGGCCGCATCAGCAGGGGCAAACTGCATTGTTGCTGGAAGTTCAGTGTTTGGTGCCCCTGAGCCAGTTCAAGTAATATCCTTACTAAGGAATTCTGTTGAGAAAGCCCAGCAAACCTTGATACAGTAA 687 0.4527 MGVTPKIAPSMLSSDFANLASEAQRMLHFGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKGYLDCHLMVTNPLDYVEPLAKAGASGFTFHVETSKDNWEELIQRIKSHGMTPGVALKPGTPIEEVYPLVEAGNPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSVFGAPEPVQVISLLRNSVEKAQQTLIQ* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0771 228 Gene3D Aldolase class I 1 226 IPR013785 -
Gso19g0771 228 Pfam Ribulose-phosphate 3 epimerase family 6 203 IPR000056 GO:0005975|GO:0016857
Gso19g0771 228 PIRSF RPE 1 227 IPR026019 GO:0004750|GO:0006098
Gso19g0771 228 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
Gso19g0771 228 Hamap Ribulose-phosphate 3-epimerase [rpe]. 4 218 IPR026019 GO:0004750|GO:0006098
Gso19g0771 228 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 34 48 IPR000056 GO:0005975|GO:0016857
Gso19g0771 228 SUPERFAMILY Ribulose-phoshate binding barrel 5 221 IPR011060 -
Gso19g0771 228 Coils Coil 212 228 - -
Gso19g0771 228 CDD RPE 6 216 IPR000056 GO:0005975|GO:0016857
Gso19g0771 228 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 225 IPR000056 GO:0005975|GO:0016857
Gso19g0771 228 TIGRFAM rpe: ribulose-phosphate 3-epimerase 6 216 IPR026019 GO:0004750|GO:0006098
Gso19g0771 228 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0771 Gso-Chr19 31407183 31413072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0771 K01783 - gmx:100500085 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0771 19 31407183 31413072 Gso16g0486 16 5725894 5731540 GST