LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso16g0486	ATGGGAATGACACCGAAAATAGCTCCTTCGATGCTCTCTTCCGACTTCGCCAATTTGGCTTCCGAGGCTCAGCGCATGCTCCACTTCGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCATTTTGTCCCCAATTTAACTATTGGCGCTCCAGTTATTGAAAGTTTGAGAAAGCACACAAAGGCATATTTGGATTGTCACCTTATGGTTACAAATCCTCTTGATTATGTTGAACCCTTGGCAAAAGCTGGTGCTTCTGGTTTTACATTTCACGTAGAGACATCAAAAGATAACTGGAAAGAACTTATCCAAAGAATCAAGTCACATGGCATGATTCCTGGTGTAGCATTAAAGCCTGGGACCCCCGTTGGAGAGGTTTATCCTCTGGTGGAAGCCGAAAATCCTGTGGAAATGGTTCTTGTGATGACTGTAGAACCTGGATTCGGAGGACAAAAATTTATGGCAGAGACGATGGATAAAGTACGTATACTTAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGTTTAGGGCCTTCAACCATAGACGTGGCCGCATCAGCAGGGGCAAATTGCATTGTTGCTGGAAGTTCTGTTTTTGGTGCACCTGAGCCAGCTCAAGTAATATCCTTACTGAGGAGTTCTGTTGAGAAAGCCCAGCAAACCTCGATACAGTAA	687	0.4527	MGMTPKIAPSMLSSDFANLASEAQRMLHFGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLAKAGASGFTFHVETSKDNWKELIQRIKSHGMIPGVALKPGTPVGEVYPLVEAENPVEMVLVMTVEPGFGGQKFMAETMDKVRILRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSVFGAPEPAQVISLLRSSVEKAQQTSIQ*	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso16g0486	228	SUPERFAMILY	Ribulose-phoshate binding barrel	3	221	IPR011060	-
	Gso16g0486	228	Gene3D	Aldolase class I	1	226	IPR013785	-
	Gso16g0486	228	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 2.	140	162	IPR000056	GO:0005975\|GO:0016857
	Gso16g0486	228	PANTHER	RIBULOSE-PHOSPHATE 3-EPIMERASE	1	225	-	-
	Gso16g0486	228	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 1.	34	48	IPR000056	GO:0005975\|GO:0016857
	Gso16g0486	228	TIGRFAM	rpe: ribulose-phosphate 3-epimerase	6	216	IPR026019	GO:0004750\|GO:0006098
	Gso16g0486	228	CDD	RPE	6	216	IPR000056	GO:0005975\|GO:0016857
	Gso16g0486	228	PIRSF	RPE	1	228	IPR026019	GO:0004750\|GO:0006098
	Gso16g0486	228	Pfam	Ribulose-phosphate 3 epimerase family	6	203	IPR000056	GO:0005975\|GO:0016857
	Gso16g0486	228	Hamap	Ribulose-phosphate 3-epimerase [rpe].	4	218	IPR026019	GO:0004750\|GO:0006098
	Gso16g0486	228	PANTHER	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	1	225	IPR000056	GO:0005975\|GO:0016857

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso16g0486	Gso-Chr16	5725894	5731540	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso16g0486	K01783		-	gmx:100527490	457.218

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g0771	19	31407183	31413072	Gso16g0486	16	5725894	5731540	GST