Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1996 ATGTGGAAGGTTGTGCGATTCGCGGCGGCCAGATCGCGGCGGTTCTCGACGGCGATTCCCGGTCCATGCAAGGTTCACAAGCGTGGCACTGATATCCTCCACGACCCTTGGTTCAACAAGGATACTGGGTTTCCTTTAACTGAAAGGGATCGATTGGGGCTTCGGGGCCTGCTTCCTCCTCGTGTCATTTCGTTTGAGCATCAATATGATCGGTTTATGAATTCATATAGATCTTTGGAGAAGAATACACAGGGCCAATCAGATAGATTTGTTTCTTTATCCAAATGGAGGATCTTAAATAGATTGCATGACAGGAATGAGACTCTATATTACAGAGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGGTTAGTGTGTGAAAATTATTCCGGGTTATTTAGACGCCCGCGTGGAATGTATTTTAGTGCGAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCATCTGATCAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGCTTGGGTGACCTTGGAGTTCAGGGCATTGGAATACCTATAGGAAAACTTGACATGTATGTTGCTGCTGCTGGTATCAACCCTCAAAAAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTTGAGGATCCCCTTTATTTAGGAGTTCGGCAACCTAGGTTGGAAGGTGAAGAGTATCTATTGATTGTGGATGAATTCATGGAAGCTGTACACGCTCGATGGCCAAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACGGCTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTCAGCATGGCTGTCCAGGCTGTTTCAAGGATGTCAGGGGGCAGTGGAACAGATGCCAACAGTCAATTTTTTTTAATTGATAAAGATGGACTTGTCACGACAGAAAGGAGCAATCTAGATCCAGCTGCAGTTCCATTTGCCAAAAATCCAAGAGATCTTGAAGGGCTTTCAGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTTGGATTGTCTGGAGTTGGTGGTGTTTTCAACACTGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCAATGTCTAATCCCACCATGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCAGGAGAAAATATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCATCCATTGACTGTATACGAGATGTTACAGCAGAGGTTGGGGCTGCTGTTGTATGTGCAGCAGTTGCAGAAAAGCAGGCTGAAGGACATGGTGATGTAGGGTTCAAAGAGCTAGAGAACATGTCAAAAGAAGAAACTGTGGAGTATGTCAGAGGCAATATGTGGTACCCTGAGTATTGCCCTCTTGTTCATGAAAAATGA 1803 0.4348 MWKVVRFAAARSRRFSTAIPGPCKVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYDRFMNSYRSLEKNTQGQSDRFVSLSKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCENYSGLFRRPRGMYFSAKDKGEMMSMIYNWPSDQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQKILPVMLDVGTNNQKLLEDPLYLGVRQPRLEGEEYLLIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRERFCMFNDDIQGTAGVALAGLLGTVRSQGQPLSDFLKQKIVVVGAGSAGLGVLSMAVQAVSRMSGGSGTDANSQFFLIDKDGLVTTERSNLDPAAVPFAKNPRDLEGLSEGASIIEVVKKVKPHVLLGLSGVGGVFNTEVLKAMRESVSTKPAIFAMSNPTMNAECTAIEAFSHAGENIVFASGSPFENVDLGNGEVGHVNQANNMYLFPGIGLGTLLSGARHITDGMLRAAAECLASYMTEDDVRKGILYPSIDCIRDVTAEVGAAVVCAAVAEKQAEGHGDVGFKELENMSKEETVEYVRGNMWYPEYCPLVHEK* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1996 600 PANTHER MALIC ENZYME 8 596 - -
Gso18g1996 600 Gene3D - 27 290 IPR037062 GO:0004471
Gso18g1996 600 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 14 292 IPR046346 -
Gso18g1996 600 ProSitePatterns Malic enzymes signature. 289 305 IPR015884 GO:0004471
Gso18g1996 600 PIRSF ME 5 599 IPR001891 GO:0004470|GO:0004471
Gso18g1996 600 Gene3D - 291 600 - -
Gso18g1996 600 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 293 597 IPR036291 -
Gso18g1996 600 SMART malic_2 103 283 IPR012301 GO:0004471
Gso18g1996 600 Pfam Malic enzyme, N-terminal domain 103 283 IPR012301 GO:0004471
Gso18g1996 600 Pfam Malic enzyme, NAD binding domain 293 555 IPR012302 GO:0051287
Gso18g1996 600 SMART Malic_M_2 293 556 IPR012302 GO:0051287
Gso18g1996 600 PRINTS Malic enzyme signature 109 133 IPR001891 GO:0004470|GO:0004471
Gso18g1996 600 PRINTS Malic enzyme signature 169 198 IPR001891 GO:0004470|GO:0004471
Gso18g1996 600 PRINTS Malic enzyme signature 205 227 IPR001891 GO:0004470|GO:0004471
Gso18g1996 600 PRINTS Malic enzyme signature 264 282 IPR001891 GO:0004470|GO:0004471
Gso18g1996 600 PRINTS Malic enzyme signature 289 305 IPR001891 GO:0004470|GO:0004471
Gso18g1996 600 PRINTS Malic enzyme signature 323 339 IPR001891 GO:0004470|GO:0004471
Gso18g1996 600 PRINTS Malic enzyme signature 432 448 IPR001891 GO:0004470|GO:0004471
Gso18g1996 600 PANTHER MALIC ENZYME-RELATED 8 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1996 Gso-Chr18 52541182 52549129 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1996 K00028 - gmx:100795823 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1996 18 52541182 52549129 Gso9g2165 9 45924140 45931875 GST
Gso18g1996 18 52541182 52549129 Gso7g0651 7 6930474 6938318 PCT
Gso18g1996 18 52541182 52549129 Gso3g0120 3 1441124 1448879 PCT
Gso7g0651 7 6930474 6938318 Gso18g1996 18 52541182 52549129 PCT
Gso3g0120 3 1441124 1448879 Gso18g1996 18 52541182 52549129 PCT