Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1995 ATGACACAGGCAAAACTAAGGTATGCTGTTGTTACTGGGGCAAACAAAGGGATAGGATTGGAGACTGTTAACCAATTGGCCTCAAATGGAGTCAAGGTGGTGCTCACAGCAAGAGATGAGGACAGAGGCCATGAAGCCATTGAGAGATTGAAAGAGTGTGGTCTCTCTGACTTTGTGATTTTTCACCAACTTGATGTGACTGACTCTGCTAGTATTGTTTCACTAGTAGAGTTTGTGAAGACACAGTTTGGGAGACTTGATATCTTGGTGAACAACGCAGGAATCAGTGGTGTCAATCCATATGAAACGGAAGGATCAACAATTAACTGGAAGGAACTGGCTCAAACTTGTGAGATGGCAGAAAAGTGCCTAACAACAAACTACTATGGTGCAAAGGAAACAACTGAGGCATTTCTTCCCCTTCTTCAATTATCCAACTCACCTAGGATTGTTAATGTTTCCTCCCAAGCAGGATTGTTAAAGGGTATAGCAAATGAATTGGCCAAAGGGGTGTTTGATGATGCTGAAAATCTTACAGAAGATAGAATAGATGAGGTACTCAAAGAATTCATCAAAGACTTCAAAGAAGGTTCACTCAAAAAGAAAGGTTGGCCAACCTTCTTGTCTGCCTATATGGTCTCAAAAGCAGCCATGAATTCATACACAAGGATTCTAGCCAAGAAGCACCAAAACTTTTGCATTAATTGTGTGTGTCCTGGTTTTGTCAAAACAGACATAAACAGAAACACTGGCTTCTTATCCGTTGACCAAGGTGCTGCTAGTGTTGTGAGGTTAGCACTGTTGCCTAATGCTTCCCCTTCTGGCCTATTCTATAGTAGGCAAGAACTGTCAAACTTTTGA 861 0.4158 MTQAKLRYAVVTGANKGIGLETVNQLASNGVKVVLTARDEDRGHEAIERLKECGLSDFVIFHQLDVTDSASIVSLVEFVKTQFGRLDILVNNAGISGVNPYETEGSTINWKELAQTCEMAEKCLTTNYYGAKETTEAFLPLLQLSNSPRIVNVSSQAGLLKGIANELAKGVFDDAENLTEDRIDEVLKEFIKDFKEGSLKKKGWPTFLSAYMVSKAAMNSYTRILAKKHQNFCINCVCPGFVKTDINRNTGFLSVDQGAASVVRLALLPNASPSGLFYSRQELSNF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1995 286 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 286 - -
Gso18g1995 286 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Gso18g1995 286 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Gso18g1995 286 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Gso18g1995 286 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Gso18g1995 286 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Gso18g1995 286 Pfam Enoyl-(Acyl carrier protein) reductase 202 251 - -
Gso18g1995 286 Gene3D - 2 286 - -
Gso18g1995 286 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 286 - -
Gso18g1995 286 CDD carb_red_PTCR-like_SDR_c 7 286 IPR045313 GO:0016616
Gso18g1995 286 Pfam short chain dehydrogenase 8 162 IPR002347 -
Gso18g1995 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 272 IPR036291 -
Gso18g1995 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Gso18g1995 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Gso18g1995 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1995 Gso-Chr18 52533657 52536316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1995 9 257 Miscellaneous Gene Families AT2G29150 29.644 5.33e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1995 K15095 - gmx:100778451 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1995 18 52533657 52536316 Gso7g0649 7 6911896 6915481 PCT
Gso7g0650 7 6920524 6924491 Gso18g1995 18 52533657 52536316 PCT
Gso3g0119 3 1426921 1429784 Gso18g1995 18 52533657 52536316 PCT