Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1928 ATGGCTTTGGGGAACAACAGTCACCAGCTTCTGTCAAAAATTGCAACCAATGACAAGCATGGAGAAAATTCTCCTTACTTTGATGGTTGGAAGGCCTATGATTCAAACCCATTTCACCCCACAAAAAATCCTCAGGGTGTCATCCAGATGGGTCTTGCAGAAAATCAGCTCTGCTTTGATCTGATTCAAGAGTGGATAAGGAACAATCCCAAGGCCTCCATTTGCACTGCTGAAGGAGTGAACCAGTTCAAATATATTGCAAACTTTCAAGACTATCATGGATTGCCAGAGTTCAGAAATGCTGTGGCAAATTTTATGTCAAAAGTGAGAGGTGGGAGAGTGAGATTTGATCCTGACCGTATTTTGATGAGTGGGGGGGCCACTGGAGCAAATGAGCTAATAATGTTCTGTTTGGCTGATCCTGGAGATGCTTTTCTGGTTCCTAGCCCTTATTATCCAGCATTTGTCCGAGACTTGTGTTGGAGAACAAGGACGCAACTAATTCCCGTAGAGTGTCACAGCTCCAACAATTTTAAGATAACAAGAGAGGCTCTTGAAGAAGCATATGAAAAAGCAAAAGAGGGTAACATCAACGTGAAAGGGTTGATCATAACAAACCCTTCAAACCCTTTGGGAACCACCCTTGACAGGGAAACACTGAAGAGCATAGTGGGGTTCATCAATGAAAAGAACATCCATTTGGTGTGTGATGAAATCTATGCAGCAACAGTGTTCAGAGCCCCTAGCTTTGTGAGTGTCTCTGAGGTGATGCAAGACATTGAGCATTGCAAAAAAGACCTCATTCACATTATTTATAGTTTGTCTAAGGATTTGGGACTTCCAGGGTTCAGAGTTGGAATAGTTTATTCATACAATGATGAAGTGGTGAACAGTGGTAGGAAAATGTCAAGCTTTGGATTGGTCTCATCTCAGACACAGTATTTTCTTGCTGCATTGCTTTCCGACGACGAGTTCGTGGAGAGGTTTCTGGCAGAGAGTGCAAGAAGGTTGGCTGCAAGGCATAGCCACTTCACAAAAGGGCTTGAAAAGGTGAACATTACTTGCCTGCCAAGTAATGCAGGACTTTTCTTTTGGATGAACTTGAGGGGTTTGCTCAAGGAGAAAACATTTGAGGGTGAAATGATGCTGTGGCGTGTGATCATCAATGAGGTGAAGCTCAATGTGTCACCTGGGTCAGCTTTCAATTGTTCTGAGCCTGGTTGGTATAGGGTGTGCTTTGCAAACATGGATGATGAAACTGTGGATGTTGCACTCATGAGAATCAGGGCTTTTGTTGGCAAAGAGACAGGGAAGCCACCAAAGGAACTCAAACGTTGGAAAAGTAACCTTAGACTCAGCTTCTCCAACTCTAGAAGATTTGATGAGAATGTTATGTCACCTCATTCACCAATGCCTCACTCACCTCTTGTCAGAGCCACTTAG 1443 0.4352 MALGNNSHQLLSKIATNDKHGENSPYFDGWKAYDSNPFHPTKNPQGVIQMGLAENQLCFDLIQEWIRNNPKASICTAEGVNQFKYIANFQDYHGLPEFRNAVANFMSKVRGGRVRFDPDRILMSGGATGANELIMFCLADPGDAFLVPSPYYPAFVRDLCWRTRTQLIPVECHSSNNFKITREALEEAYEKAKEGNINVKGLIITNPSNPLGTTLDRETLKSIVGFINEKNIHLVCDEIYAATVFRAPSFVSVSEVMQDIEHCKKDLIHIIYSLSKDLGLPGFRVGIVYSYNDEVVNSGRKMSSFGLVSSQTQYFLAALLSDDEFVERFLAESARRLAARHSHFTKGLEKVNITCLPSNAGLFFWMNLRGLLKEKTFEGEMMLWRVIINEVKLNVSPGSAFNCSEPGWYRVCFANMDDETVDVALMRIRAFVGKETGKPPKELKRWKSNLRLSFSNSRRFDENVMSPHSPMPHSPLVRAT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1928 480 SUPERFAMILY PLP-dependent transferases 16 433 IPR015424 -
Gso18g1928 480 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7 449 - -
Gso18g1928 480 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 7 449 - -
Gso18g1928 480 CDD AAT_like 88 430 - -
Gso18g1928 480 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 273 286 IPR004838 GO:0003824|GO:0009058|GO:0030170
Gso18g1928 480 Gene3D - 70 322 IPR015421 GO:0003824
Gso18g1928 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Gso18g1928 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Gso18g1928 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Gso18g1928 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Gso18g1928 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Gso18g1928 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Gso18g1928 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 267 291 - -
Gso18g1928 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 299 322 - -
Gso18g1928 480 Pfam Aminotransferase class I and II 48 428 IPR004839 GO:0009058|GO:0030170
Gso18g1928 480 Gene3D Aspartate Aminotransferase, domain 1 36 427 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1928 Gso-Chr18 51703086 51706904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1928 K20772 - gmx:100775969 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1928 18 51703086 51706904 Gso9g2101 9 45303506 45307046 GST
Gso18g1928 18 51703086 51706904 Gso7g0571 7 6057904 6061480 PCT
Gso18g1928 18 51703086 51706904 Gso16g0262 16 3001588 3005592 PCT
Gso7g0571 7 6057904 6061480 Gso18g1928 18 51703086 51706904 PCT
Gso16g0262 16 3001588 3005592 Gso18g1928 18 51703086 51706904 PCT