Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1750 ATGGAGAGAAGGGTTGGCTATGAGGTGCTGGTGGCTTTGGTGACCCTTTTGGTTTTCTCATTTGCTTGTGCCACTGCTTCATCATCAGGACCAACAAAACTCCACCACCGTGTGGAGCAATTCAGGAGGAATCTGCTTGCTAATGGCCTTGGTAGAACTCCTCCAATGGGGTGGAACAGTTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGCTGATGCCCTTGTTTCTACTGGTCTGTCCAAGCTTGGATACACTTATGTCAATATAGATGATTGTTGGGCTGAATTAAATCGGGATGCTAAGGGTAATCTGGTAGCAAAAAATTCAACGTTTCCTTCTGGAATCAAAGCTCTTGCAGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTTGCATCATGGGGTATTGATTATTTGAAGTATGATAACTGTAACAATGATGGATCAAAACCAACTGATAGATACCCTATTATGACTCGGGCTTTAATGATGGCTGGTCGTCCAATCTTCTTCTCACTATGTGAATGGGGAGACTTACACCCAGCTCTATGGGGTGCTAAAGTGGGAAACAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGCATGGTTTCAAGGGCAGATATGAATGAAGTTTATGCAGAGTATGCAAGACCTGGTGGTTGGAATGATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGATTTGGGCAGGTCCTCTTTCAGGGTACAGGGTAGCTGTTGTCTTGCTTAATCGTGGCCCTTCGAAAATCTCAATTACAGCCAACTGGGATGACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGATCCTCATGGGTGTAAAATGTACGTGCTGAAGCCAGTGGCTTGA 1233 0.4282 MERRVGYEVLVALVTLLVFSFACATASSSGPTKLHHRVEQFRRNLLANGLGRTPPMGWNSWNHFSCQINEKMIRETADALVSTGLSKLGYTYVNIDDCWAELNRDAKGNLVAKNSTFPSGIKALADYVHGKGLKLGIYSDAGYFTCSKQMPGSLGHEFQDAKTFASWGIDYLKYDNCNNDGSKPTDRYPIMTRALMMAGRPIFFSLCEWGDLHPALWGAKVGNSWRTTNDINDSWESMVSRADMNEVYAEYARPGGWNDPDMLEVGNGGMTKNEYIVHFSLWALSKAPLLLGCDVRNMTKETMEIVANKEVISVNQDPLGVQGKKVRMEGDQEIWAGPLSGYRVAVVLLNRGPSKISITANWDDIDIPPKSAVEARDLWEHKTLMRPFVDKLTATVDPHGCKMYVLKPVA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1750 410 Pfam Alpha galactosidase A 53 317 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 PRINTS Glycosyl hydrolase family 27 signature 48 67 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 PRINTS Glycosyl hydrolase family 27 signature 84 99 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 PRINTS Glycosyl hydrolase family 27 signature 125 146 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 PRINTS Glycosyl hydrolase family 27 signature 160 177 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 PRINTS Glycosyl hydrolase family 27 signature 187 205 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 PRINTS Glycosyl hydrolase family 27 signature 252 271 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 PRINTS Glycosyl hydrolase family 27 signature 273 294 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Gso18g1750 410 SUPERFAMILY Glycosyl hydrolase domain 312 407 - -
Gso18g1750 410 ProSitePatterns Alpha-galactosidase signature. 89 105 IPR000111 GO:0004553|GO:0005975
Gso18g1750 410 CDD GH27 54 317 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 Gene3D Aldolase class I 46 319 IPR013785 -
Gso18g1750 410 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 18 410 IPR002241 GO:0004553|GO:0005975
Gso18g1750 410 Pfam Alpha galactosidase C-terminal beta sandwich domain 329 406 IPR041233 -
Gso18g1750 410 Gene3D - 320 409 IPR013780 -
Gso18g1750 410 PANTHER ALPHA-GALACTOSIDASE 18 410 - -
Gso18g1750 410 SUPERFAMILY (Trans)glycosidases 47 318 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1750 Gso-Chr18 49884923 49888593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1750 43 406 Glycoside Hydrolase AT5G08370 66.758 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1750 K07407 - gmx:100812330 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1750 18 49884923 49888593 Gso9g2257 9 46841074 46845288 GST
Gso18g1750 18 49884923 49888593 Gso3g0021 3 209303 212164 PCT