Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1702 ATGGCTAGCATGAAGGTTACATGGGTGGTTGTGATCATGTGCATGGCCGTGGTGGGTGCACCGATGATGGCGCAAGCCATGACATGCAATGATGTGACGGTGAACATGGCACAGTGCCTATCCTACCTGATGCAGGGAGGAACACCTTCAACACTTTGCTGCAGCGGAGTCAAGAACATTCTTGGCTCTGCTGTCACCACCGTTGACAAACAAACTGTGTGCAACTGTCTCAAGGCGGATGCTGCTAGGTACAACATCAATGACCAGTATGCTCAGGCACTCCCTGGTTTCTGCAAGGTCAATGTCCCTTACAAGATCAGCCGCTCCACTAACTGTGCAAGCATCAGGTTCTGA 354 0.5141 MASMKVTWVVVIMCMAVVGAPMMAQAMTCNDVTVNMAQCLSYLMQGGTPSTLCCSGVKNILGSAVTTVDKQTVCNCLKADAARYNINDQYAQALPGFCKVNVPYKISRSTNCASIRF* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1702 117 ProSitePatterns Plant lipid transfer proteins signature. 94 115 IPR000528 GO:0006869|GO:0008289
Gso18g1702 117 Gene3D - 26 117 IPR036312 -
Gso18g1702 117 CDD nsLTP1 28 112 - -
Gso18g1702 117 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 114 - -
Gso18g1702 117 Pfam Protease inhibitor/seed storage/LTP family 29 112 IPR016140 -
Gso18g1702 117 SMART aai_6 29 112 IPR016140 -
Gso18g1702 117 PANTHER - 1 114 IPR000528 GO:0006869|GO:0008289
Gso18g1702 117 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 115 IPR036312 -
Gso18g1702 117 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Gso18g1702 117 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Gso18g1702 117 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Gso18g1702 117 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Gso18g1702 117 PRINTS Plant phospholipid transfer protein signature 103 114 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1702 Gso-Chr18 49338936 49340500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1702 1 116 Acyl Lipid Metabolism Gene Families AT2G38540 41.525 8.91e-26 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1702 - - gmx:100798112 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1702 18 49338936 49340500 Gso1g1105 1 44987554 44989712 PCT
Gso18g1702 18 49338936 49340500 Gso3g0338 3 5146636 5148408 PCT
Gso1g1105 1 44987554 44989712 Gso18g1702 18 49338936 49340500 PCT
Gso3g0338 3 5146636 5148408 Gso18g1702 18 49338936 49340500 PCT