Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0348 ATGGACGAAGAAGAGGTGCGCAAGATCTTCAGCAAGTTCGACAAGAACGGCGACGGCAAGATCTCGTGCGCGGAGCTGAAGGAGATGATGGCGGCGCTGGGATCCAAAACGACGTCGGACGAGGTGAAGCGCATGATGGCGGAGCTGGACCGGAACGGCGACGGCTACATTGACTTGAAGGAGTTCGGCGAGTTCCACTGCGGCGGCGGTGGCGACGGGAGGGAGCTCCGGGAGGCGTTCGAGCTGTACGATCTGGACAAGAACGGGCTGATCTCGGCGAAGGAGCTGCACTCCGTGATGCGGAGGTTGGGGGAGAAGTGCTCCCTCAGCGACTGCCGGAGGATGATCGGAAACGTCGATGCCGACGGCGACGGCAACGTCAATTTCGAAGAGTTCAAGAAGATGATGAGTCGCTCGTAG 420 0.6024 MDEEEVRKIFSKFDKNGDGKISCAELKEMMAALGSKTTSDEVKRMMAELDRNGDGYIDLKEFGEFHCGGGGDGRELREAFELYDLDKNGLISAKELHSVMRRLGEKCSLSDCRRMIGNVDADGDGNVNFEEFKKMMSRS* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0348 139 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Gso18g0348 139 ProSitePatterns EF-hand calcium-binding domain. 120 132 IPR018247 -
Gso18g0348 139 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 139 - -
Gso18g0348 139 SMART efh_1 41 69 IPR002048 GO:0005509
Gso18g0348 139 SMART efh_1 75 103 IPR002048 GO:0005509
Gso18g0348 139 SMART efh_1 5 33 IPR002048 GO:0005509
Gso18g0348 139 SMART efh_1 111 139 IPR002048 GO:0005509
Gso18g0348 139 Pfam EF-hand domain pair 75 137 IPR002048 GO:0005509
Gso18g0348 139 Pfam EF-hand domain pair 4 63 IPR002048 GO:0005509
Gso18g0348 139 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Gso18g0348 139 Gene3D - 72 139 - -
Gso18g0348 139 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 139 - -
Gso18g0348 139 CDD EFh 75 137 IPR002048 GO:0005509
Gso18g0348 139 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Gso18g0348 139 SUPERFAMILY EF-hand 3 138 IPR011992 -
Gso18g0348 139 ProSiteProfiles EF-hand calcium-binding domain profile. 107 139 IPR002048 GO:0005509
Gso18g0348 139 ProSiteProfiles EF-hand calcium-binding domain profile. 37 65 IPR002048 GO:0005509
Gso18g0348 139 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Gso18g0348 139 Gene3D - 1 67 - -
Gso18g0348 139 CDD EFh 5 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0348 Gso-Chr18 3295829 3296653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0348 2 137 EF-hand Containing Proteins AT1G18210 56.618 1.73e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0348 K13448 - gmx:100791597 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0348 18 3295829 3296653 Gso14g1820 14 50553155 50554032 PCT
Gso18g0348 18 3295829 3296653 Gso2g2095 2 45563767 45564646 PCT
Gso14g1820 14 50553155 50554032 Gso18g0348 18 3295829 3296653 PCT
Gso2g2095 2 45563767 45564646 Gso18g0348 18 3295829 3296653 PCT