Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1820 ATGGACGACGAAGTGCAGCAGATCTTCAACAAGTTCGACAAGAACGGCGACGGAAAAATCTCTATGGCAGAGCTGAAGGACATGCTCTCCGCGCTCGGATCCAAAACGACGGACGAGGAGTTGAAACGCATGATCGAGGAGCTCGACCAAAACGGCGACGGTTTCATTGACCTCAAGGAGTTCGCGGACTTTCACTGCAATGGCGGCGCCGGAAAGGACGACTCGAAGGAGCTCCGCGACGCGTTCGATCTCTACGACGTCGACAAGAACGGCCTCATCTCCGCGAAGGAGTTGCACCACGTGCTCCGGAATCTCGGCGAGAAGTGCTCCCTCAGTGACTGCCGGAGAATGATCAGCAACGTCGACGGCGACGGCGACGGCAACGTCAACTTCGAGGAATTCAAAAAGATGATGACTCGCTCTTAA 426 0.5563 MDDEVQQIFNKFDKNGDGKISMAELKDMLSALGSKTTDEELKRMIEELDQNGDGFIDLKEFADFHCNGGAGKDDSKELRDAFDLYDVDKNGLISAKELHHVLRNLGEKCSLSDCRRMISNVDGDGDGNVNFEEFKKMMTRS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1820 141 SUPERFAMILY EF-hand 3 140 IPR011992 -
Gso14g1820 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 141 - -
Gso14g1820 141 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Gso14g1820 141 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Gso14g1820 141 Gene3D - 75 141 - -
Gso14g1820 141 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Gso14g1820 141 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Gso14g1820 141 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Gso14g1820 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 141 - -
Gso14g1820 141 Pfam EF-hand domain pair 77 139 IPR002048 GO:0005509
Gso14g1820 141 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Gso14g1820 141 CDD EFh 4 65 IPR002048 GO:0005509
Gso14g1820 141 SMART efh_1 113 141 IPR002048 GO:0005509
Gso14g1820 141 SMART efh_1 77 105 IPR002048 GO:0005509
Gso14g1820 141 SMART efh_1 4 32 IPR002048 GO:0005509
Gso14g1820 141 SMART efh_1 40 68 IPR002048 GO:0005509
Gso14g1820 141 ProSiteProfiles EF-hand calcium-binding domain profile. 109 141 IPR002048 GO:0005509
Gso14g1820 141 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Gso14g1820 141 Gene3D - 1 74 - -
Gso14g1820 141 CDD EFh 77 139 IPR002048 GO:0005509
Gso14g1820 141 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1820 Gso-Chr14 50553155 50554032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1820 3 139 EF-hand Containing Proteins AT1G18210 56.204 3.69e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1820 K13448 - gmx:100806182 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1820 14 50553155 50554032 Gso2g2095 2 45563767 45564646 GST
Gso18g0348 18 3295829 3296653 Gso14g1820 14 50553155 50554032 PCT
Gso14g1820 14 50553155 50554032 Gso18g0348 18 3295829 3296653 PCT